Cluster: HRGMv2_0156_CGC7
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0156
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_233 | 294380 | 295711 | - | 2.A.66.1.28 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_234 | 295796 | 297649 | - | 2.A.9.3.1 |
| peptidase | HRGMv2_0156_1 | HRGMv2_0156_1_235 | 297708 | 299333 | - | C26.964 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_236 | 299523 | 301031 | + | 9.B.168.1.2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_237 | 301291 | 301881 | + | NusG |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_238 | 302208 | 304136 | + | 9.B.18.2.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_239 | 304153 | 304989 | + | 1.B.18.3.3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_240 | 305000 | 307426 | + | 8.A.3.3.4 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_241 | 307459 | 308778 | + | UDPG_MGDP_dh | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_242 | 308781 | 309845 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | KR | GDP_Man_Dehyd |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_243 | 309866 | 310915 | + | 9.B.18.2.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_244 | 310890 | 312128 | + | Epimerase | Polysacc_synt_C |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_245 | 312130 | 313320 | + | Epimerase_2 | Glyphos_transf |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_246 | 313771 | 315210 | + | 2.A.66.2.16 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_247 | 315210 | 316100 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_248 | 316110 | 317339 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_249 | 317327 | 318499 | + | GT4 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_250 | 319125 | 320249 | + | GT4 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_251 | 320246 | 320767 | + | Hexapep | Hexapep_2 | Hexapep_2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_252 | 320785 | 321792 | + | 9.B.97.1.11 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_253 | 321802 | 322260 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_254 | 322257 | 323309 | + | GT4 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_255 | 323306 | 324415 | + | GT4 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_256 | 324488 | 325084 | + | Hexapep | Hexapep_2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_257 | 325130 | 326005 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_258 | 326123 | 326785 | + | 9.B.18.1.2 |
Gene ID: HRGMv2_0156_1_233
Type: TC
Location: 294380 - 295711 (-)
Type: TC
Location: 294380 - 295711 (-)
Gene ID: HRGMv2_0156_1_234
Type: TC
Location: 295796 - 297649 (-)
Type: TC
Location: 295796 - 297649 (-)
Gene ID: HRGMv2_0156_1_235
Type: peptidase
Location: 297708 - 299333 (-)
Type: peptidase
Location: 297708 - 299333 (-)
Gene ID: HRGMv2_0156_1_236
Type: TC
Location: 299523 - 301031 (+)
Type: TC
Location: 299523 - 301031 (+)
Gene ID: HRGMv2_0156_1_237
Type: pfam
Location: 301291 - 301881 (+)
Type: pfam
Location: 301291 - 301881 (+)
Gene ID: HRGMv2_0156_1_238
Type: TC
Location: 302208 - 304136 (+)
Type: TC
Location: 302208 - 304136 (+)
Gene ID: HRGMv2_0156_1_239
Type: TC
Location: 304153 - 304989 (+)
Type: TC
Location: 304153 - 304989 (+)
Gene ID: HRGMv2_0156_1_240
Type: TC
Location: 305000 - 307426 (+)
Type: TC
Location: 305000 - 307426 (+)
Gene ID: HRGMv2_0156_1_241
Type: pfam
Location: 307459 - 308778 (+)
Type: pfam
Location: 307459 - 308778 (+)
Gene ID: HRGMv2_0156_1_242
Type: pfam
Location: 308781 - 309845 (+)
Type: pfam
Location: 308781 - 309845 (+)
Gene ID: HRGMv2_0156_1_243
Type: TC
Location: 309866 - 310915 (+)
Type: TC
Location: 309866 - 310915 (+)
Gene ID: HRGMv2_0156_1_244
Type: pfam
Location: 310890 - 312128 (+)
Type: pfam
Location: 310890 - 312128 (+)
Gene ID: HRGMv2_0156_1_245
Type: pfam
Location: 312130 - 313320 (+)
Type: pfam
Location: 312130 - 313320 (+)
Gene ID: HRGMv2_0156_1_246
Type: TC
Location: 313771 - 315210 (+)
Type: TC
Location: 313771 - 315210 (+)
Gene ID: HRGMv2_0156_1_247
Type: CAZyme
Location: 315210 - 316100 (+)
Type: CAZyme
Location: 315210 - 316100 (+)
Gene ID: HRGMv2_0156_1_248
Type:
Location: 316110 - 317339 (+)
Type:
Location: 316110 - 317339 (+)
Gene ID: HRGMv2_0156_1_249
Type: CAZyme
Location: 317327 - 318499 (+)
Type: CAZyme
Location: 317327 - 318499 (+)
Gene ID: HRGMv2_0156_1_250
Type: CAZyme
Location: 319125 - 320249 (+)
Type: CAZyme
Location: 319125 - 320249 (+)
Gene ID: HRGMv2_0156_1_251
Type: pfam
Location: 320246 - 320767 (+)
Type: pfam
Location: 320246 - 320767 (+)
Gene ID: HRGMv2_0156_1_252
Type: TC
Location: 320785 - 321792 (+)
Type: TC
Location: 320785 - 321792 (+)
Gene ID: HRGMv2_0156_1_253
Type: pfam
Location: 321802 - 322260 (+)
Type: pfam
Location: 321802 - 322260 (+)
Gene ID: HRGMv2_0156_1_254
Type: CAZyme
Location: 322257 - 323309 (+)
Type: CAZyme
Location: 322257 - 323309 (+)
Gene ID: HRGMv2_0156_1_255
Type: CAZyme
Location: 323306 - 324415 (+)
Type: CAZyme
Location: 323306 - 324415 (+)
Gene ID: HRGMv2_0156_1_256
Type: pfam
Location: 324488 - 325084 (+)
Type: pfam
Location: 324488 - 325084 (+)
Gene ID: HRGMv2_0156_1_257
Type: pfam
Location: 325130 - 326005 (+)
Type: pfam
Location: 325130 - 326005 (+)
Gene ID: HRGMv2_0156_1_258
Type: TC
Location: 326123 - 326785 (+)
Type: TC
Location: 326123 - 326785 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_249 | vegetarian > omnivore | 1.06489 | 0.00153 |
| HRGMv2_0156_1_251 | vegetarian > omnivore | 2.42011 | 0.00153 |
| HRGMv2_0156_1_251 | vegan > omnivore | 2.11588 | 0.00026 |