Cluster: HRGMv2_0156_CGC69
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3021 | 3863798 | 3867358 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3022 | 3867373 | 3869139 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3023 | 3869301 | 3870200 | + | Exo_endo_phos |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3024 | 3870429 | 3872294 | + | GH127 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_3025 | 3872310 | 3873047 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3026 | 3873159 | 3876437 | + | GH106 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3027 | 3876622 | 3878430 | - | GH2 |
| sulfatase | HRGMv2_0156_1 | HRGMv2_0156_1_3028 | 3878470 | 3879546 | - | S1_16 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3029 | 3879550 | 3880635 | - | GH43_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3030 | 3880662 | 3882491 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3031 | 3882515 | 3885598 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0156_1_3021
Type: TC
Location: 3863798 - 3867358 (+)
Type: TC
Location: 3863798 - 3867358 (+)
Gene ID: HRGMv2_0156_1_3022
Type: pfam
Location: 3867373 - 3869139 (+)
Type: pfam
Location: 3867373 - 3869139 (+)
Gene ID: HRGMv2_0156_1_3023
Type: pfam
Location: 3869301 - 3870200 (+)
Type: pfam
Location: 3869301 - 3870200 (+)
Gene ID: HRGMv2_0156_1_3024
Type: CAZyme
Location: 3870429 - 3872294 (+)
Type: CAZyme
Location: 3870429 - 3872294 (+)
Gene ID: HRGMv2_0156_1_3025
Type:
Location: 3872310 - 3873047 (+)
Type:
Location: 3872310 - 3873047 (+)
Gene ID: HRGMv2_0156_1_3026
Type: CAZyme
Location: 3873159 - 3876437 (+)
Type: CAZyme
Location: 3873159 - 3876437 (+)
Gene ID: HRGMv2_0156_1_3027
Type: CAZyme
Location: 3876622 - 3878430 (-)
Type: CAZyme
Location: 3876622 - 3878430 (-)
Gene ID: HRGMv2_0156_1_3028
Type: sulfatase
Location: 3878470 - 3879546 (-)
Type: sulfatase
Location: 3878470 - 3879546 (-)
Gene ID: HRGMv2_0156_1_3029
Type: CAZyme
Location: 3879550 - 3880635 (-)
Type: CAZyme
Location: 3879550 - 3880635 (-)
Gene ID: HRGMv2_0156_1_3030
Type: pfam
Location: 3880662 - 3882491 (-)
Type: pfam
Location: 3880662 - 3882491 (-)
Gene ID: HRGMv2_0156_1_3031
Type: TC
Location: 3882515 - 3885598 (-)
Type: TC
Location: 3882515 - 3885598 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3021 | vegan > omnivore | 2.93473 | 0.00026 |
| HRGMv2_0156_1_3021 | vegetarian > omnivore | 1.04131 | 0.00153 |
| HRGMv2_0156_1_3022 | vegan > omnivore | 3.35027 | 0.00026 |
| HRGMv2_0156_1_3022 | vegetarian > omnivore | 1.72506 | 0.00153 |
| HRGMv2_0156_1_3023 | vegetarian > omnivore | 1.70586 | 0.00153 |
| HRGMv2_0156_1_3023 | vegan > omnivore | 3.61836 | 0.00026 |
| HRGMv2_0156_1_3024 | vegan > omnivore | 3.07866 | 0.00026 |
| HRGMv2_0156_1_3025 | vegetarian > omnivore | 3.02367 | 0.00153 |
| HRGMv2_0156_1_3025 | vegan > omnivore | 4.72265 | 0.00026 |
| HRGMv2_0156_1_3026 | vegetarian > omnivore | 1.91868 | 0.00153 |
| HRGMv2_0156_1_3026 | vegan > omnivore | 3.49806 | 0.00026 |