Cluster: HRGMv2_0156_CGC60
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_09516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2746 | 3457443 | 3460721 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2747 | 3460869 | 3462362 | - | GH30 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2748 | 3462560 | 3466525 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_2749 | 3466744 | 3467211 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2750 | 3467422 | 3469857 | + | GH95 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2751 | 3470016 | 3474035 | + | HTH_AraC |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2752 | 3474057 | 3475445 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2753 | 3475453 | 3477369 | - | CE1 | CE6 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2754 | 3477391 | 3478716 | - | GH5_21 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2755 | 3478844 | 3481042 | - | GH10 |
Gene ID: HRGMv2_0156_1_2746
Type: TC
Location: 3457443 - 3460721 (-)
Type: TC
Location: 3457443 - 3460721 (-)
Gene ID: HRGMv2_0156_1_2747
Type: CAZyme
Location: 3460869 - 3462362 (-)
Type: CAZyme
Location: 3460869 - 3462362 (-)
Gene ID: HRGMv2_0156_1_2748
Type: TF
Location: 3462560 - 3466525 (-)
Type: TF
Location: 3462560 - 3466525 (-)
Gene ID: HRGMv2_0156_1_2749
Type:
Location: 3466744 - 3467211 (+)
Type:
Location: 3466744 - 3467211 (+)
Gene ID: HRGMv2_0156_1_2750
Type: CAZyme
Location: 3467422 - 3469857 (+)
Type: CAZyme
Location: 3467422 - 3469857 (+)
Gene ID: HRGMv2_0156_1_2751
Type: TF
Location: 3470016 - 3474035 (+)
Type: TF
Location: 3470016 - 3474035 (+)
Gene ID: HRGMv2_0156_1_2752
Type: CAZyme
Location: 3474057 - 3475445 (-)
Type: CAZyme
Location: 3474057 - 3475445 (-)
Gene ID: HRGMv2_0156_1_2753
Type: CAZyme
Location: 3475453 - 3477369 (-)
Type: CAZyme
Location: 3475453 - 3477369 (-)
Gene ID: HRGMv2_0156_1_2754
Type: CAZyme
Location: 3477391 - 3478716 (-)
Type: CAZyme
Location: 3477391 - 3478716 (-)
Gene ID: HRGMv2_0156_1_2755
Type: CAZyme
Location: 3478844 - 3481042 (-)
Type: CAZyme
Location: 3478844 - 3481042 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_2746 | vegan > omnivore | 3.02739 | 0.00026 |
| HRGMv2_0156_1_2746 | vegetarian > omnivore | 1.17030 | 0.00153 |
| HRGMv2_0156_1_2747 | vegan > omnivore | 3.10979 | 0.00026 |
| HRGMv2_0156_1_2747 | vegetarian > omnivore | 1.92581 | 0.00153 |
| HRGMv2_0156_1_2748 | vegan > omnivore | 2.91887 | 0.00026 |
| HRGMv2_0156_1_2748 | vegetarian > omnivore | 2.08473 | 0.00153 |
| HRGMv2_0156_1_2749 | vegan > omnivore | 4.02021 | 0.00026 |
| HRGMv2_0156_1_2749 | vegetarian > omnivore | 2.31709 | 0.00153 |
| HRGMv2_0156_1_2754 | vegan > omnivore | 1.06659 | 0.00026 |
| HRGMv2_0156_1_2754 | vegetarian > omnivore | 1.08997 | 0.00153 |
| HRGMv2_0156_1_2755 | vegan > omnivore | 1.62330 | 0.00026 |
| HRGMv2_0156_1_2755 | vegetarian > omnivore | 1.79586 | 0.00153 |