Cluster: HRGMv2_0156_CGC58
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_02229
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2689 | 3371291 | 3374617 | - | 1.B.14.6.1 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2690 | 3374875 | 3378810 | + | HTH_AraC |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2691 | 3378844 | 3379539 | - | RadC | UPF0758_N |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2692 | 3379684 | 3381699 | + | GH20 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2693 | 3381846 | 3382835 | - | GT2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2694 | 3382937 | 3384136 | - | Acetate_kinase |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2695 | 3384177 | 3385196 | - | PTA_PTB |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2696 | 3385393 | 3385836 | + | 1.E.14.1.13 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2697 | 3385833 | 3386528 | + | 2.A.122.1.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2698 | 3386585 | 3387502 | + | LPG_synthase_C |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2699 | 3387516 | 3388532 | + | Acetyltransf_1 | Acetyltransf_9 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2700 | 3388624 | 3389757 | - | GH105 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2701 | 3389762 | 3391057 | - | PL42 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2702 | 3391067 | 3392107 | - | GH43_24 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2703 | 3392330 | 3394063 | - | BNR_4 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2704 | 3394113 | 3396113 | - | GH154 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2705 | 3396320 | 3398911 | + | HTH_AraC |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2706 | 3399000 | 3401474 | + | GH31_4 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2707 | 3402279 | 3403139 | - | TonB_C | DUF4488 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2708 | 3403348 | 3405294 | - | GH97 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2709 | 3405330 | 3407795 | - | GH51_2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2710 | 3408116 | 3409090 | - | GH43_19 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2711 | 3409139 | 3411475 | - | GH35 |
Gene ID: HRGMv2_0156_1_2689
Type: TC
Location: 3371291 - 3374617 (-)
Type: TC
Location: 3371291 - 3374617 (-)
Gene ID: HRGMv2_0156_1_2690
Type: TF
Location: 3374875 - 3378810 (+)
Type: TF
Location: 3374875 - 3378810 (+)
Gene ID: HRGMv2_0156_1_2691
Type: pfam
Location: 3378844 - 3379539 (-)
Type: pfam
Location: 3378844 - 3379539 (-)
Gene ID: HRGMv2_0156_1_2692
Type: CAZyme
Location: 3379684 - 3381699 (+)
Type: CAZyme
Location: 3379684 - 3381699 (+)
Gene ID: HRGMv2_0156_1_2693
Type: CAZyme
Location: 3381846 - 3382835 (-)
Type: CAZyme
Location: 3381846 - 3382835 (-)
Gene ID: HRGMv2_0156_1_2694
Type: pfam
Location: 3382937 - 3384136 (-)
Type: pfam
Location: 3382937 - 3384136 (-)
Gene ID: HRGMv2_0156_1_2695
Type: pfam
Location: 3384177 - 3385196 (-)
Type: pfam
Location: 3384177 - 3385196 (-)
Gene ID: HRGMv2_0156_1_2696
Type: TC
Location: 3385393 - 3385836 (+)
Type: TC
Location: 3385393 - 3385836 (+)
Gene ID: HRGMv2_0156_1_2697
Type: TC
Location: 3385833 - 3386528 (+)
Type: TC
Location: 3385833 - 3386528 (+)
Gene ID: HRGMv2_0156_1_2698
Type: pfam
Location: 3386585 - 3387502 (+)
Type: pfam
Location: 3386585 - 3387502 (+)
Gene ID: HRGMv2_0156_1_2699
Type: pfam
Location: 3387516 - 3388532 (+)
Type: pfam
Location: 3387516 - 3388532 (+)
Gene ID: HRGMv2_0156_1_2700
Type: CAZyme
Location: 3388624 - 3389757 (-)
Type: CAZyme
Location: 3388624 - 3389757 (-)
Gene ID: HRGMv2_0156_1_2701
Type: CAZyme
Location: 3389762 - 3391057 (-)
Type: CAZyme
Location: 3389762 - 3391057 (-)
Gene ID: HRGMv2_0156_1_2702
Type: CAZyme
Location: 3391067 - 3392107 (-)
Type: CAZyme
Location: 3391067 - 3392107 (-)
Gene ID: HRGMv2_0156_1_2703
Type: pfam
Location: 3392330 - 3394063 (-)
Type: pfam
Location: 3392330 - 3394063 (-)
Gene ID: HRGMv2_0156_1_2704
Type: CAZyme
Location: 3394113 - 3396113 (-)
Type: CAZyme
Location: 3394113 - 3396113 (-)
Gene ID: HRGMv2_0156_1_2705
Type: TF
Location: 3396320 - 3398911 (+)
Type: TF
Location: 3396320 - 3398911 (+)
Gene ID: HRGMv2_0156_1_2706
Type: CAZyme
Location: 3399000 - 3401474 (+)
Type: CAZyme
Location: 3399000 - 3401474 (+)
Gene ID: HRGMv2_0156_1_2707
Type: pfam
Location: 3402279 - 3403139 (-)
Type: pfam
Location: 3402279 - 3403139 (-)
Gene ID: HRGMv2_0156_1_2708
Type: CAZyme
Location: 3403348 - 3405294 (-)
Type: CAZyme
Location: 3403348 - 3405294 (-)
Gene ID: HRGMv2_0156_1_2709
Type: CAZyme
Location: 3405330 - 3407795 (-)
Type: CAZyme
Location: 3405330 - 3407795 (-)
Gene ID: HRGMv2_0156_1_2710
Type: CAZyme
Location: 3408116 - 3409090 (-)
Type: CAZyme
Location: 3408116 - 3409090 (-)
Gene ID: HRGMv2_0156_1_2711
Type: CAZyme
Location: 3409139 - 3411475 (-)
Type: CAZyme
Location: 3409139 - 3411475 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_2689 | vegan > omnivore | 1.45160 | 0.00026 |
| HRGMv2_0156_1_2689 | vegetarian > omnivore | 1.55155 | 0.00153 |
| HRGMv2_0156_1_2690 | vegan > omnivore | 1.59536 | 0.00026 |
| HRGMv2_0156_1_2690 | vegetarian > omnivore | 1.74368 | 0.00153 |
| HRGMv2_0156_1_2692 | vegan > omnivore | 1.21319 | 0.00026 |
| HRGMv2_0156_1_2692 | vegetarian > omnivore | 1.48509 | 0.00153 |
| HRGMv2_0156_1_2703 | vegan > omnivore | 1.79243 | 0.00026 |
| HRGMv2_0156_1_2703 | vegetarian > omnivore | 1.87429 | 0.00153 |
| HRGMv2_0156_1_2704 | vegan > omnivore | 1.25150 | 0.00026 |
| HRGMv2_0156_1_2704 | vegetarian > omnivore | 1.17177 | 0.00153 |
| HRGMv2_0156_1_2707 | vegan > omnivore | 1.56419 | 0.00026 |
| HRGMv2_0156_1_2707 | vegetarian > omnivore | 1.46517 | 0.00153 |