Cluster: HRGMv2_0156_CGC55
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0156
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2610 | 3256062 | 3257717 | + | 2.A.1.42.2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2611 | 3257829 | 3259370 | - | GH28 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2612 | 3259583 | 3263962 | + | HTH_AraC |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2613 | 3263999 | 3265303 | - | CE8 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2614 | 3265337 | 3267010 | - | DUF4957 | DUF5123 |
| sulfatase | HRGMv2_0156_1 | HRGMv2_0156_1_2615 | 3267027 | 3269102 | - | S1_27 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2616 | 3269113 | 3272364 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2617 | 3272476 | 3274926 | - | GH95 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2618 | 3274978 | 3276597 | - | CE8 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2619 | 3276881 | 3278521 | + | PL1_2 |
Gene ID: HRGMv2_0156_1_2610
Type: TC
Location: 3256062 - 3257717 (+)
Type: TC
Location: 3256062 - 3257717 (+)
Gene ID: HRGMv2_0156_1_2611
Type: CAZyme
Location: 3257829 - 3259370 (-)
Type: CAZyme
Location: 3257829 - 3259370 (-)
Gene ID: HRGMv2_0156_1_2612
Type: TF
Location: 3259583 - 3263962 (+)
Type: TF
Location: 3259583 - 3263962 (+)
Gene ID: HRGMv2_0156_1_2613
Type: CAZyme
Location: 3263999 - 3265303 (-)
Type: CAZyme
Location: 3263999 - 3265303 (-)
Gene ID: HRGMv2_0156_1_2614
Type: pfam
Location: 3265337 - 3267010 (-)
Type: pfam
Location: 3265337 - 3267010 (-)
Gene ID: HRGMv2_0156_1_2615
Type: sulfatase
Location: 3267027 - 3269102 (-)
Type: sulfatase
Location: 3267027 - 3269102 (-)
Gene ID: HRGMv2_0156_1_2616
Type: TC
Location: 3269113 - 3272364 (-)
Type: TC
Location: 3269113 - 3272364 (-)
Gene ID: HRGMv2_0156_1_2617
Type: CAZyme
Location: 3272476 - 3274926 (-)
Type: CAZyme
Location: 3272476 - 3274926 (-)
Gene ID: HRGMv2_0156_1_2618
Type: CAZyme
Location: 3274978 - 3276597 (-)
Type: CAZyme
Location: 3274978 - 3276597 (-)
Gene ID: HRGMv2_0156_1_2619
Type: CAZyme
Location: 3276881 - 3278521 (+)
Type: CAZyme
Location: 3276881 - 3278521 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_2611 | vegan > omnivore | 3.08118 | 0.00026 |
| HRGMv2_0156_1_2611 | vegetarian > omnivore | 1.96114 | 0.00153 |
| HRGMv2_0156_1_2612 | vegan > omnivore | 3.00694 | 0.00026 |
| HRGMv2_0156_1_2612 | vegetarian > omnivore | 2.67125 | 0.00153 |
| HRGMv2_0156_1_2613 | vegan > omnivore | 2.85172 | 0.00026 |
| HRGMv2_0156_1_2613 | vegetarian > omnivore | 2.75898 | 0.00153 |
| HRGMv2_0156_1_2614 | vegan > omnivore | 3.01958 | 0.00026 |
| HRGMv2_0156_1_2614 | vegetarian > omnivore | 3.10541 | 0.00153 |
| HRGMv2_0156_1_2615 | vegan > omnivore | 2.20128 | 0.00026 |
| HRGMv2_0156_1_2615 | vegetarian > omnivore | 2.34402 | 0.00153 |
| HRGMv2_0156_1_2616 | vegan > omnivore | 2.78657 | 0.00026 |
| HRGMv2_0156_1_2616 | vegetarian > omnivore | 1.40951 | 0.00153 |
| HRGMv2_0156_1_2617 | vegan > omnivore | 2.60466 | 0.00026 |
| HRGMv2_0156_1_2617 | vegetarian > omnivore | 1.65811 | 0.00153 |
| HRGMv2_0156_1_2618 | vegan > omnivore | 2.78927 | 0.00026 |
| HRGMv2_0156_1_2618 | vegetarian > omnivore | 1.22770 | 0.00153 |
| HRGMv2_0156_1_2619 | vegan > omnivore | 2.57150 | 0.00026 |
| HRGMv2_0156_1_2619 | vegetarian > omnivore | 1.67403 | 0.00153 |