Cluster: HRGMv2_0156_CGC50
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_01310
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2368 | 2912306 | 2916631 | + | 2.A.6.1.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2369 | 2916694 | 2917584 | + | 2.A.6.2.20 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2370 | 2917658 | 2918725 | + | 9.B.33.1.1 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2371 | 2918731 | 2919525 | + | LytTR |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2372 | 2919867 | 2921813 | - | GH97 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2373 | 2921867 | 2925124 | - | GH43_34 | GH92 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2374 | 2925133 | 2925930 | - | BSP |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2375 | 2925943 | 2928285 | - | GH92 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2376 | 2928298 | 2930577 | - | GH92 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2377 | 2930654 | 2932858 | - | GH31_15 |
Gene ID: HRGMv2_0156_1_2368
Type: TC
Location: 2912306 - 2916631 (+)
Type: TC
Location: 2912306 - 2916631 (+)
Gene ID: HRGMv2_0156_1_2369
Type: TC
Location: 2916694 - 2917584 (+)
Type: TC
Location: 2916694 - 2917584 (+)
Gene ID: HRGMv2_0156_1_2370
Type: TC
Location: 2917658 - 2918725 (+)
Type: TC
Location: 2917658 - 2918725 (+)
Gene ID: HRGMv2_0156_1_2371
Type: TF
Location: 2918731 - 2919525 (+)
Type: TF
Location: 2918731 - 2919525 (+)
Gene ID: HRGMv2_0156_1_2372
Type: CAZyme
Location: 2919867 - 2921813 (-)
Type: CAZyme
Location: 2919867 - 2921813 (-)
Gene ID: HRGMv2_0156_1_2373
Type: CAZyme
Location: 2921867 - 2925124 (-)
Type: CAZyme
Location: 2921867 - 2925124 (-)
Gene ID: HRGMv2_0156_1_2374
Type: pfam
Location: 2925133 - 2925930 (-)
Type: pfam
Location: 2925133 - 2925930 (-)
Gene ID: HRGMv2_0156_1_2375
Type: CAZyme
Location: 2925943 - 2928285 (-)
Type: CAZyme
Location: 2925943 - 2928285 (-)
Gene ID: HRGMv2_0156_1_2376
Type: CAZyme
Location: 2928298 - 2930577 (-)
Type: CAZyme
Location: 2928298 - 2930577 (-)
Gene ID: HRGMv2_0156_1_2377
Type: CAZyme
Location: 2930654 - 2932858 (-)
Type: CAZyme
Location: 2930654 - 2932858 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_2370 | vegetarian > omnivore | 1.12551 | 0.00153 |
| HRGMv2_0156_1_2371 | vegetarian > omnivore | 1.15899 | 0.00153 |
| HRGMv2_0156_1_2377 | vegan > omnivore | 2.90666 | 0.00026 |
| HRGMv2_0156_1_2377 | vegetarian > omnivore | 2.89259 | 0.00153 |