Cluster: HRGMv2_0156_CGC46
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 12
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00982
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2216 | 2687699 | 2690290 | + | GH3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2217 | 2691014 | 2692588 | - | GH28 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2218 | 2692614 | 2695025 | - | CE8 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2219 | 2695067 | 2696923 | - | Mfa_like_1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2220 | 2696979 | 2698631 | - | DUF5123 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2221 | 2698652 | 2700553 | - | 8.A.46.1.3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2222 | 2700579 | 2703791 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2223 | 2703837 | 2706224 | - | PL1_2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2224 | 2706259 | 2708064 | - | DUF5123 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_2225 | 2708077 | 2708961 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2226 | 2709357 | 2710886 | - | PL1_2 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2227 | 2711005 | 2711823 | - | LytTR |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2228 | 2711827 | 2712621 | - | 9.B.116.3.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2229 | 2712977 | 2716225 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2230 | 2716251 | 2718158 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2231 | 2718177 | 2720051 | + | DUF5123 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2232 | 2720136 | 2721764 | + | CE8 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2233 | 2721858 | 2723441 | + | PL1_2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2234 | 2723473 | 2725134 | + | PL1_2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2235 | 2725170 | 2726666 | + | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_2236 | 2726692 | 2726883 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_2237 | 2726811 | 2731346 | - | HTH_AraC |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2238 | 2731512 | 2733260 | - | CE12 | CE8 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2239 | 2733619 | 2734563 | - | CE8 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2240 | 2734600 | 2735799 | - | GH105 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2241 | 2736101 | 2737507 | + | 4.A.5.1.4 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2242 | 2737575 | 2738495 | + | KduI |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_2243 | 2738373 | 2738678 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2244 | 2738762 | 2740279 | + | 2.A.1.14.25 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2245 | 2740684 | 2744175 | - | DEAD | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2246 | 2744138 | 2744974 | - | 2.A.64.1.2 |
Gene ID: HRGMv2_0156_1_2216
Type: CAZyme
Location: 2687699 - 2690290 (+)
Type: CAZyme
Location: 2687699 - 2690290 (+)
Gene ID: HRGMv2_0156_1_2217
Type: CAZyme
Location: 2691014 - 2692588 (-)
Type: CAZyme
Location: 2691014 - 2692588 (-)
Gene ID: HRGMv2_0156_1_2218
Type: CAZyme
Location: 2692614 - 2695025 (-)
Type: CAZyme
Location: 2692614 - 2695025 (-)
Gene ID: HRGMv2_0156_1_2219
Type: pfam
Location: 2695067 - 2696923 (-)
Type: pfam
Location: 2695067 - 2696923 (-)
Gene ID: HRGMv2_0156_1_2220
Type: pfam
Location: 2696979 - 2698631 (-)
Type: pfam
Location: 2696979 - 2698631 (-)
Gene ID: HRGMv2_0156_1_2221
Type: TC
Location: 2698652 - 2700553 (-)
Type: TC
Location: 2698652 - 2700553 (-)
Gene ID: HRGMv2_0156_1_2222
Type: TC
Location: 2700579 - 2703791 (-)
Type: TC
Location: 2700579 - 2703791 (-)
Gene ID: HRGMv2_0156_1_2223
Type: CAZyme
Location: 2703837 - 2706224 (-)
Type: CAZyme
Location: 2703837 - 2706224 (-)
Gene ID: HRGMv2_0156_1_2224
Type: pfam
Location: 2706259 - 2708064 (-)
Type: pfam
Location: 2706259 - 2708064 (-)
Gene ID: HRGMv2_0156_1_2225
Type:
Location: 2708077 - 2708961 (-)
Type:
Location: 2708077 - 2708961 (-)
Gene ID: HRGMv2_0156_1_2226
Type: CAZyme
Location: 2709357 - 2710886 (-)
Type: CAZyme
Location: 2709357 - 2710886 (-)
Gene ID: HRGMv2_0156_1_2227
Type: TF
Location: 2711005 - 2711823 (-)
Type: TF
Location: 2711005 - 2711823 (-)
Gene ID: HRGMv2_0156_1_2228
Type: TC
Location: 2711827 - 2712621 (-)
Type: TC
Location: 2711827 - 2712621 (-)
Gene ID: HRGMv2_0156_1_2229
Type: TC
Location: 2712977 - 2716225 (+)
Type: TC
Location: 2712977 - 2716225 (+)
Gene ID: HRGMv2_0156_1_2230
Type: pfam
Location: 2716251 - 2718158 (+)
Type: pfam
Location: 2716251 - 2718158 (+)
Gene ID: HRGMv2_0156_1_2231
Type: pfam
Location: 2718177 - 2720051 (+)
Type: pfam
Location: 2718177 - 2720051 (+)
Gene ID: HRGMv2_0156_1_2232
Type: CAZyme
Location: 2720136 - 2721764 (+)
Type: CAZyme
Location: 2720136 - 2721764 (+)
Gene ID: HRGMv2_0156_1_2233
Type: CAZyme
Location: 2721858 - 2723441 (+)
Type: CAZyme
Location: 2721858 - 2723441 (+)
Gene ID: HRGMv2_0156_1_2234
Type: CAZyme
Location: 2723473 - 2725134 (+)
Type: CAZyme
Location: 2723473 - 2725134 (+)
Gene ID: HRGMv2_0156_1_2235
Type: CAZyme
Location: 2725170 - 2726666 (+)
Type: CAZyme
Location: 2725170 - 2726666 (+)
Gene ID: HRGMv2_0156_1_2236
Type:
Location: 2726692 - 2726883 (+)
Type:
Location: 2726692 - 2726883 (+)
Gene ID: HRGMv2_0156_1_2237
Type: TF
Location: 2726811 - 2731346 (-)
Type: TF
Location: 2726811 - 2731346 (-)
Gene ID: HRGMv2_0156_1_2238
Type: CAZyme
Location: 2731512 - 2733260 (-)
Type: CAZyme
Location: 2731512 - 2733260 (-)
Gene ID: HRGMv2_0156_1_2239
Type: CAZyme
Location: 2733619 - 2734563 (-)
Type: CAZyme
Location: 2733619 - 2734563 (-)
Gene ID: HRGMv2_0156_1_2240
Type: CAZyme
Location: 2734600 - 2735799 (-)
Type: CAZyme
Location: 2734600 - 2735799 (-)
Gene ID: HRGMv2_0156_1_2241
Type: TC
Location: 2736101 - 2737507 (+)
Type: TC
Location: 2736101 - 2737507 (+)
Gene ID: HRGMv2_0156_1_2242
Type: pfam
Location: 2737575 - 2738495 (+)
Type: pfam
Location: 2737575 - 2738495 (+)
Gene ID: HRGMv2_0156_1_2243
Type:
Location: 2738373 - 2738678 (-)
Type:
Location: 2738373 - 2738678 (-)
Gene ID: HRGMv2_0156_1_2244
Type: TC
Location: 2738762 - 2740279 (+)
Type: TC
Location: 2738762 - 2740279 (+)
Gene ID: HRGMv2_0156_1_2245
Type: pfam
Location: 2740684 - 2744175 (-)
Type: pfam
Location: 2740684 - 2744175 (-)
Gene ID: HRGMv2_0156_1_2246
Type: TC
Location: 2744138 - 2744974 (-)
Type: TC
Location: 2744138 - 2744974 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_2218 | vegan > omnivore | 1.93615 | 0.00026 |
| HRGMv2_0156_1_2219 | vegan > omnivore | 1.65188 | 0.00026 |
| HRGMv2_0156_1_2220 | vegan > omnivore | 1.46115 | 0.00026 |
| HRGMv2_0156_1_2221 | vegan > omnivore | 1.13136 | 0.00026 |
| HRGMv2_0156_1_2222 | vegan > omnivore | 1.34922 | 0.00026 |
| HRGMv2_0156_1_2223 | vegan > omnivore | 1.62794 | 0.00026 |
| HRGMv2_0156_1_2224 | vegan > omnivore | 2.23904 | 0.00026 |
| HRGMv2_0156_1_2224 | vegetarian > omnivore | 1.43495 | 0.00153 |
| HRGMv2_0156_1_2225 | vegan > omnivore | 3.54603 | 0.00026 |
| HRGMv2_0156_1_2225 | vegetarian > omnivore | 2.16244 | 0.00153 |
| HRGMv2_0156_1_2226 | vegan > omnivore | 1.37684 | 0.00026 |
| HRGMv2_0156_1_2226 | vegetarian > omnivore | 1.27054 | 0.00153 |
| HRGMv2_0156_1_2227 | vegetarian > omnivore | 1.10425 | 0.00153 |
| HRGMv2_0156_1_2228 | vegan > omnivore | 1.06667 | 0.00026 |
| HRGMv2_0156_1_2231 | vegetarian > omnivore | 1.59608 | 0.00153 |
| HRGMv2_0156_1_2234 | vegan > omnivore | 1.07411 | 0.00026 |
| HRGMv2_0156_1_2234 | vegetarian > omnivore | 1.06631 | 0.00153 |
| HRGMv2_0156_1_2236 | vegetarian > omnivore | 1.41046 | 0.00153 |