Cluster: HRGMv2_0156_CGC45
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00927
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2182 | 2627171 | 2630302 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2183 | 2630327 | 2632408 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2184 | 2632510 | 2633196 | - | Lipase_GDSL_2 | Lipase_GDSL_lke |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2185 | 2633285 | 2634670 | - | GH28 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_2186 | 2634715 | 2635080 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2187 | 2635119 | 2637269 | - | GH42 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2188 | 2637301 | 2639658 | - | GH43_18 | GH43_34 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2189 | 2639901 | 2642777 | + | GH2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2190 | 2642907 | 2644145 | + | CE12 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2191 | 2644194 | 2645729 | + | GH28 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_2192 | 2645680 | 2646282 | + | DUF4450 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2193 | 2646279 | 2647682 | + | GH28 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_2194 | 2647679 | 2650444 | + | GH106 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_2195 | 2650791 | 2651963 | - | Aminotran_1_2 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_2196 | 2652148 | 2653419 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2197 | 2653544 | 2655217 | - | 8.A.46.1.3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_2198 | 2655247 | 2658432 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0156_1_2182
Type: TC
Location: 2627171 - 2630302 (+)
Type: TC
Location: 2627171 - 2630302 (+)
Gene ID: HRGMv2_0156_1_2183
Type: pfam
Location: 2630327 - 2632408 (+)
Type: pfam
Location: 2630327 - 2632408 (+)
Gene ID: HRGMv2_0156_1_2184
Type: pfam
Location: 2632510 - 2633196 (-)
Type: pfam
Location: 2632510 - 2633196 (-)
Gene ID: HRGMv2_0156_1_2185
Type: CAZyme
Location: 2633285 - 2634670 (-)
Type: CAZyme
Location: 2633285 - 2634670 (-)
Gene ID: HRGMv2_0156_1_2186
Type:
Location: 2634715 - 2635080 (-)
Type:
Location: 2634715 - 2635080 (-)
Gene ID: HRGMv2_0156_1_2187
Type: CAZyme
Location: 2635119 - 2637269 (-)
Type: CAZyme
Location: 2635119 - 2637269 (-)
Gene ID: HRGMv2_0156_1_2188
Type: CAZyme
Location: 2637301 - 2639658 (-)
Type: CAZyme
Location: 2637301 - 2639658 (-)
Gene ID: HRGMv2_0156_1_2189
Type: CAZyme
Location: 2639901 - 2642777 (+)
Type: CAZyme
Location: 2639901 - 2642777 (+)
Gene ID: HRGMv2_0156_1_2190
Type: CAZyme
Location: 2642907 - 2644145 (+)
Type: CAZyme
Location: 2642907 - 2644145 (+)
Gene ID: HRGMv2_0156_1_2191
Type: CAZyme
Location: 2644194 - 2645729 (+)
Type: CAZyme
Location: 2644194 - 2645729 (+)
Gene ID: HRGMv2_0156_1_2192
Type: pfam
Location: 2645680 - 2646282 (+)
Type: pfam
Location: 2645680 - 2646282 (+)
Gene ID: HRGMv2_0156_1_2193
Type: CAZyme
Location: 2646279 - 2647682 (+)
Type: CAZyme
Location: 2646279 - 2647682 (+)
Gene ID: HRGMv2_0156_1_2194
Type: CAZyme
Location: 2647679 - 2650444 (+)
Type: CAZyme
Location: 2647679 - 2650444 (+)
Gene ID: HRGMv2_0156_1_2195
Type: STP
Location: 2650791 - 2651963 (-)
Type: STP
Location: 2650791 - 2651963 (-)
Gene ID: HRGMv2_0156_1_2196
Type:
Location: 2652148 - 2653419 (-)
Type:
Location: 2652148 - 2653419 (-)
Gene ID: HRGMv2_0156_1_2197
Type: TC
Location: 2653544 - 2655217 (-)
Type: TC
Location: 2653544 - 2655217 (-)
Gene ID: HRGMv2_0156_1_2198
Type: TC
Location: 2655247 - 2658432 (-)
Type: TC
Location: 2655247 - 2658432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_2184 | vegan > omnivore | 1.23618 | 0.00026 |
| HRGMv2_0156_1_2184 | vegetarian > omnivore | 1.13807 | 0.00153 |
| HRGMv2_0156_1_2186 | vegan > omnivore | 1.20558 | 0.00026 |
| HRGMv2_0156_1_2186 | vegetarian > omnivore | 1.16054 | 0.00153 |
| HRGMv2_0156_1_2197 | vegan > omnivore | 1.10813 | 0.00026 |
| HRGMv2_0156_1_2198 | vegan > omnivore | 1.62503 | 0.00026 |