Cluster: HRGMv2_0156_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: pectin/galactan
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00031
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1648 | 1946620 | 1947798 | - | PL13 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1649 | 1947922 | 1948473 | - | DUF4738 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_1650 | 1948621 | 1952145 | + | HTH_AraC |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1651 | 1952261 | 1954870 | + | GH147 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1652 | 1955094 | 1958069 | + | 1.B.14.6.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1653 | 1958088 | 1959668 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1654 | 1959692 | 1961446 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1655 | 1961492 | 1962577 | + | GH53 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1656 | 1962649 | 1965090 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_1657 | 1965250 | 1965882 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1658 | 1966111 | 1966797 | - | TrkA_N | F420_oxidored |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1659 | 1966802 | 1968631 | - | 2.A.38.4.3 |
Gene ID: HRGMv2_0156_1_1648
Type: CAZyme
Location: 1946620 - 1947798 (-)
Type: CAZyme
Location: 1946620 - 1947798 (-)
Gene ID: HRGMv2_0156_1_1649
Type: pfam
Location: 1947922 - 1948473 (-)
Type: pfam
Location: 1947922 - 1948473 (-)
Gene ID: HRGMv2_0156_1_1650
Type: TF
Location: 1948621 - 1952145 (+)
Type: TF
Location: 1948621 - 1952145 (+)
Gene ID: HRGMv2_0156_1_1651
Type: CAZyme
Location: 1952261 - 1954870 (+)
Type: CAZyme
Location: 1952261 - 1954870 (+)
Gene ID: HRGMv2_0156_1_1652
Type: TC
Location: 1955094 - 1958069 (+)
Type: TC
Location: 1955094 - 1958069 (+)
Gene ID: HRGMv2_0156_1_1653
Type: TC
Location: 1958088 - 1959668 (+)
Type: TC
Location: 1958088 - 1959668 (+)
Gene ID: HRGMv2_0156_1_1654
Type: pfam
Location: 1959692 - 1961446 (+)
Type: pfam
Location: 1959692 - 1961446 (+)
Gene ID: HRGMv2_0156_1_1655
Type: CAZyme
Location: 1961492 - 1962577 (+)
Type: CAZyme
Location: 1961492 - 1962577 (+)
Gene ID: HRGMv2_0156_1_1656
Type: CAZyme
Location: 1962649 - 1965090 (+)
Type: CAZyme
Location: 1962649 - 1965090 (+)
Gene ID: HRGMv2_0156_1_1657
Type:
Location: 1965250 - 1965882 (+)
Type:
Location: 1965250 - 1965882 (+)
Gene ID: HRGMv2_0156_1_1658
Type: pfam
Location: 1966111 - 1966797 (-)
Type: pfam
Location: 1966111 - 1966797 (-)
Gene ID: HRGMv2_0156_1_1659
Type: TC
Location: 1966802 - 1968631 (-)
Type: TC
Location: 1966802 - 1968631 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_1654 | vegan > omnivore | 1.96762 | 0.00026 |
| HRGMv2_0156_1_1654 | vegetarian > omnivore | 1.41234 | 0.00153 |
| HRGMv2_0156_1_1655 | vegan > omnivore | 1.86746 | 0.00026 |
| HRGMv2_0156_1_1655 | vegetarian > omnivore | 1.37204 | 0.00153 |
| HRGMv2_0156_1_1657 | vegetarian > omnivore | 1.40320 | 0.00153 |