Cluster: HRGMv2_0156_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00016
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_96 | 122524 | 124077 | - | GH18 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_97 | 124105 | 125340 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_98 | 125355 | 126389 | - | GH18_BT1044-like |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_99 | 126414 | 128009 | - | 8.A.46.2.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_100 | 128014 | 131298 | - | 1.B.14.6.13 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_101 | 131489 | 132475 | - | FecR |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_102 | 132532 | 133083 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_103 | 133326 | 134636 | - | 2.A.1.7.5 |
Gene ID: HRGMv2_0156_1_96
Type: CAZyme
Location: 122524 - 124077 (-)
Type: CAZyme
Location: 122524 - 124077 (-)
Gene ID: HRGMv2_0156_1_97
Type: pfam
Location: 124105 - 125340 (-)
Type: pfam
Location: 124105 - 125340 (-)
Gene ID: HRGMv2_0156_1_98
Type: pfam
Location: 125355 - 126389 (-)
Type: pfam
Location: 125355 - 126389 (-)
Gene ID: HRGMv2_0156_1_99
Type: TC
Location: 126414 - 128009 (-)
Type: TC
Location: 126414 - 128009 (-)
Gene ID: HRGMv2_0156_1_100
Type: TC
Location: 128014 - 131298 (-)
Type: TC
Location: 128014 - 131298 (-)
Gene ID: HRGMv2_0156_1_101
Type: STP
Location: 131489 - 132475 (-)
Type: STP
Location: 131489 - 132475 (-)
Gene ID: HRGMv2_0156_1_102
Type: STP
Location: 132532 - 133083 (-)
Type: STP
Location: 132532 - 133083 (-)
Gene ID: HRGMv2_0156_1_103
Type: TC
Location: 133326 - 134636 (-)
Type: TC
Location: 133326 - 134636 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_96 | vegan > omnivore | 1.05044 | 0.00026 |
| HRGMv2_0156_1_97 | vegan > omnivore | 1.08844 | 0.00026 |
| HRGMv2_0156_1_97 | vegetarian > omnivore | 1.03468 | 0.00153 |
| HRGMv2_0156_1_101 | vegetarian > omnivore | 1.06357 | 0.00153 |