Cluster: HRGMv2_0156_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_01569
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1517 | 1798152 | 1800065 | - | CBM6 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1518 | 1800513 | 1801925 | - | GH28 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1519 | 1802262 | 1803407 | - | 1.B.5.1.6 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1520 | 1803421 | 1804791 | - | DUF5690 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_1521 | 1805011 | 1807377 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1522 | 1807402 | 1809435 | - | 1.B.14.6.8 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1523 | 1809462 | 1810007 | - | DUF3575 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1524 | 1810249 | 1813002 | - | PL40 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1525 | 1813165 | 1815072 | + | 3.D.1.5.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1526 | 1815086 | 1815538 | + | NADH-G_4Fe-4S_3 | Fer2_4 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_1527 | 1815483 | 1816853 | + | Fer4 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1528 | 1816873 | 1817349 | + | 3.D.1.5.1 |
Gene ID: HRGMv2_0156_1_1517
Type: CAZyme
Location: 1798152 - 1800065 (-)
Type: CAZyme
Location: 1798152 - 1800065 (-)
Gene ID: HRGMv2_0156_1_1518
Type: CAZyme
Location: 1800513 - 1801925 (-)
Type: CAZyme
Location: 1800513 - 1801925 (-)
Gene ID: HRGMv2_0156_1_1519
Type: TC
Location: 1802262 - 1803407 (-)
Type: TC
Location: 1802262 - 1803407 (-)
Gene ID: HRGMv2_0156_1_1520
Type: pfam
Location: 1803421 - 1804791 (-)
Type: pfam
Location: 1803421 - 1804791 (-)
Gene ID: HRGMv2_0156_1_1521
Type:
Location: 1805011 - 1807377 (-)
Type:
Location: 1805011 - 1807377 (-)
Gene ID: HRGMv2_0156_1_1522
Type: TC
Location: 1807402 - 1809435 (-)
Type: TC
Location: 1807402 - 1809435 (-)
Gene ID: HRGMv2_0156_1_1523
Type: pfam
Location: 1809462 - 1810007 (-)
Type: pfam
Location: 1809462 - 1810007 (-)
Gene ID: HRGMv2_0156_1_1524
Type: CAZyme
Location: 1810249 - 1813002 (-)
Type: CAZyme
Location: 1810249 - 1813002 (-)
Gene ID: HRGMv2_0156_1_1525
Type: TC
Location: 1813165 - 1815072 (+)
Type: TC
Location: 1813165 - 1815072 (+)
Gene ID: HRGMv2_0156_1_1526
Type: pfam
Location: 1815086 - 1815538 (+)
Type: pfam
Location: 1815086 - 1815538 (+)
Gene ID: HRGMv2_0156_1_1527
Type: STP
Location: 1815483 - 1816853 (+)
Type: STP
Location: 1815483 - 1816853 (+)
Gene ID: HRGMv2_0156_1_1528
Type: TC
Location: 1816873 - 1817349 (+)
Type: TC
Location: 1816873 - 1817349 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.