Cluster: HRGMv2_0156_CGC26
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_02371
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1470 | 1725115 | 1725933 | - | CE1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1471 | 1725959 | 1726393 | - | DUF2007 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1472 | 1726575 | 1728953 | + | 1.B.14.6.5 |
| peptidase | HRGMv2_0156_1 | HRGMv2_0156_1_1473 | 1728987 | 1729772 | + | M48.UPC |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1474 | 1730024 | 1731316 | + | 9.A.40.2.2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1475 | 1731374 | 1731850 | + | NlpE |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1476 | 1731939 | 1732496 | - | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1477 | 1732561 | 1733781 | - | GH88 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1478 | 1733850 | 1735499 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1479 | 1735706 | 1737913 | - | GH36 |
Gene ID: HRGMv2_0156_1_1470
Type: CAZyme
Location: 1725115 - 1725933 (-)
Type: CAZyme
Location: 1725115 - 1725933 (-)
Gene ID: HRGMv2_0156_1_1471
Type: pfam
Location: 1725959 - 1726393 (-)
Type: pfam
Location: 1725959 - 1726393 (-)
Gene ID: HRGMv2_0156_1_1472
Type: TC
Location: 1726575 - 1728953 (+)
Type: TC
Location: 1726575 - 1728953 (+)
Gene ID: HRGMv2_0156_1_1473
Type: peptidase
Location: 1728987 - 1729772 (+)
Type: peptidase
Location: 1728987 - 1729772 (+)
Gene ID: HRGMv2_0156_1_1474
Type: TC
Location: 1730024 - 1731316 (+)
Type: TC
Location: 1730024 - 1731316 (+)
Gene ID: HRGMv2_0156_1_1475
Type: pfam
Location: 1731374 - 1731850 (+)
Type: pfam
Location: 1731374 - 1731850 (+)
Gene ID: HRGMv2_0156_1_1476
Type: pfam
Location: 1731939 - 1732496 (-)
Type: pfam
Location: 1731939 - 1732496 (-)
Gene ID: HRGMv2_0156_1_1477
Type: CAZyme
Location: 1732561 - 1733781 (-)
Type: CAZyme
Location: 1732561 - 1733781 (-)
Gene ID: HRGMv2_0156_1_1478
Type: CAZyme
Location: 1733850 - 1735499 (-)
Type: CAZyme
Location: 1733850 - 1735499 (-)
Gene ID: HRGMv2_0156_1_1479
Type: CAZyme
Location: 1735706 - 1737913 (-)
Type: CAZyme
Location: 1735706 - 1737913 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_1476 | vegan > omnivore | 2.15247 | 0.00026 |
| HRGMv2_0156_1_1476 | vegetarian > omnivore | 2.39753 | 0.00153 |
| HRGMv2_0156_1_1479 | vegan > omnivore | 1.90269 | 0.00026 |
| HRGMv2_0156_1_1479 | vegetarian > omnivore | 1.72666 | 0.00153 |