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Cluster: HRGMv2_0156_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0156_1 HRGMv2_0156_1_1312 1501935 1503986 + 1.B.14.15.2
STP HRGMv2_0156_1 HRGMv2_0156_1_1313 1504004 1504843 + SBP_bac_3
TF HRGMv2_0156_1 HRGMv2_0156_1_1314 1504830 1509020 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_1315 1509328 1510584 + GH88
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_1316 1510606 1513083 + GH2
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_1317 1513080 1514252 + PL38
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_1318 1514274 1515476 + PL38
TC HRGMv2_0156_1 HRGMv2_0156_1_1319 1515500 1516054 + 1.B.14.6.1
TC HRGMv2_0156_1 HRGMv2_0156_1_1320 1516021 1518606 + 1.B.14.6.1
TC HRGMv2_0156_1 HRGMv2_0156_1_1321 1518627 1520117 + 8.A.46.1.5
pfam HRGMv2_0156_1 HRGMv2_0156_1_1322 1520137 1521681 + TIG
NULL(UNKNOWN) HRGMv2_0156_1 HRGMv2_0156_1_1323 1521694 1523160 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_1324 1523592 1524578 + GH109
pfam HRGMv2_0156_1 HRGMv2_0156_1_1325 1524734 1525204 + dCMP_cyt_deam_1 | MafB19-deam
pfam HRGMv2_0156_1 HRGMv2_0156_1_1326 1525272 1526054 + Mfa_like_1
TC HRGMv2_0156_1 HRGMv2_0156_1_1327 1526174 1527772 - 1.B.9.4.2
Gene ID: HRGMv2_0156_1_1312
Type: TC
Location: 1501935 - 1503986 (+)
Gene ID: HRGMv2_0156_1_1313
Type: STP
Location: 1504004 - 1504843 (+)
Gene ID: HRGMv2_0156_1_1314
Type: TF
Location: 1504830 - 1509020 (+)
Gene ID: HRGMv2_0156_1_1315
Type: CAZyme
Location: 1509328 - 1510584 (+)
Gene ID: HRGMv2_0156_1_1316
Type: CAZyme
Location: 1510606 - 1513083 (+)
Gene ID: HRGMv2_0156_1_1317
Type: CAZyme
Location: 1513080 - 1514252 (+)
Gene ID: HRGMv2_0156_1_1318
Type: CAZyme
Location: 1514274 - 1515476 (+)
Gene ID: HRGMv2_0156_1_1319
Type: TC
Location: 1515500 - 1516054 (+)
Gene ID: HRGMv2_0156_1_1320
Type: TC
Location: 1516021 - 1518606 (+)
Gene ID: HRGMv2_0156_1_1321
Type: TC
Location: 1518627 - 1520117 (+)
Gene ID: HRGMv2_0156_1_1322
Type: pfam
Location: 1520137 - 1521681 (+)
Gene ID: HRGMv2_0156_1_1323
Type:
Location: 1521694 - 1523160 (+)
Gene ID: HRGMv2_0156_1_1324
Type: CAZyme
Location: 1523592 - 1524578 (+)
Gene ID: HRGMv2_0156_1_1325
Type: pfam
Location: 1524734 - 1525204 (+)
Gene ID: HRGMv2_0156_1_1326
Type: pfam
Location: 1525272 - 1526054 (+)
Gene ID: HRGMv2_0156_1_1327
Type: TC
Location: 1526174 - 1527772 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0156_1_1314 vegan > omnivore 1.59967 0.00026
HRGMv2_0156_1_1314 vegetarian > omnivore 1.13014 0.00153
HRGMv2_0156_1_1315 vegan > omnivore 2.11121 0.00026
HRGMv2_0156_1_1315 vegetarian > omnivore 2.42801 0.00153
HRGMv2_0156_1_1316 vegetarian > omnivore 1.64478 0.00153
HRGMv2_0156_1_1316 vegan > omnivore 1.77609 0.00026
HRGMv2_0156_1_1317 vegetarian > omnivore 1.44077 0.00153
HRGMv2_0156_1_1317 vegan > omnivore 1.56693 0.00026
HRGMv2_0156_1_1318 vegan > omnivore 2.60429 0.00026
HRGMv2_0156_1_1318 vegetarian > omnivore 3.60616 0.00150
HRGMv2_0156_1_1319 vegetarian > omnivore 1.15977 0.00153
HRGMv2_0156_1_1319 vegan > omnivore 1.17443 0.00026
HRGMv2_0156_1_1320 vegetarian > omnivore 1.76399 0.00153
HRGMv2_0156_1_1320 vegan > omnivore 1.72098 0.00026
HRGMv2_0156_1_1321 vegetarian > omnivore 3.01902 0.00153
HRGMv2_0156_1_1321 vegan > omnivore 2.75516 0.00026
HRGMv2_0156_1_1322 vegan > omnivore 1.86989 0.00026
HRGMv2_0156_1_1322 vegetarian > omnivore 1.54251 0.00153
HRGMv2_0156_1_1323 vegetarian > omnivore 1.33758 0.00153
HRGMv2_0156_1_1323 vegan > omnivore 1.88416 0.00026

🧭 Explore Read Mapping of CGC

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