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Cluster: HRGMv2_0156_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0156_1 HRGMv2_0156_1_80 101910 103670 + 3.A.2.3.3
TC HRGMv2_0156_1 HRGMv2_0156_1_81 103700 105028 + 3.A.2.3.3
pfam HRGMv2_0156_1 HRGMv2_0156_1_82 105136 105741 + ATP-synt_D
TC HRGMv2_0156_1 HRGMv2_0156_1_83 105738 107555 + 3.A.2.2.2
TC HRGMv2_0156_1 HRGMv2_0156_1_84 107630 108094 + 3.A.2.2.2
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_85 108297 109958 + GT3
CAZyme HRGMv2_0156_1 HRGMv2_0156_1_86 109996 112560 + GT35
pfam HRGMv2_0156_1 HRGMv2_0156_1_87 112771 113874 - Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 | DUF4369
TC HRGMv2_0156_1 HRGMv2_0156_1_88 114019 115404 + 3.A.1.11.8
TC HRGMv2_0156_1 HRGMv2_0156_1_89 115416 116216 + 3.A.1.11.8
TC HRGMv2_0156_1 HRGMv2_0156_1_90 116210 117004 + 3.A.1.11.8
Gene ID: HRGMv2_0156_1_80
Type: TC
Location: 101910 - 103670 (+)
Gene ID: HRGMv2_0156_1_81
Type: TC
Location: 103700 - 105028 (+)
Gene ID: HRGMv2_0156_1_82
Type: pfam
Location: 105136 - 105741 (+)
Gene ID: HRGMv2_0156_1_83
Type: TC
Location: 105738 - 107555 (+)
Gene ID: HRGMv2_0156_1_84
Type: TC
Location: 107630 - 108094 (+)
Gene ID: HRGMv2_0156_1_85
Type: CAZyme
Location: 108297 - 109958 (+)
Gene ID: HRGMv2_0156_1_86
Type: CAZyme
Location: 109996 - 112560 (+)
Gene ID: HRGMv2_0156_1_87
Type: pfam
Location: 112771 - 113874 (-)
Gene ID: HRGMv2_0156_1_88
Type: TC
Location: 114019 - 115404 (+)
Gene ID: HRGMv2_0156_1_89
Type: TC
Location: 115416 - 116216 (+)
Gene ID: HRGMv2_0156_1_90
Type: TC
Location: 116210 - 117004 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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