Cluster: HRGMv2_0156_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00985
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1065 | 1259539 | 1261158 | - | 3.A.1.121.4 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_1066 | 1261228 | 1261374 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1067 | 1261424 | 1262005 | + | 3.A.8.1.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1068 | 1262045 | 1263229 | + | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1069 | 1263368 | 1264507 | + | DNA_alkylation |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1070 | 1264594 | 1266312 | - | 8.A.46.1.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1071 | 1266324 | 1269068 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1072 | 1269167 | 1271242 | - | GH20 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1073 | 1271242 | 1273566 | - | GH20 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1074 | 1273601 | 1276192 | - | GH2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_1075 | 1276349 | 1277983 | - | CBM93 | GH33 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_1076 | 1278602 | 1279765 | + | GlcNAc_2-epim |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_1077 | 1279818 | 1283042 | + | 1.B.14.6.2 |
Gene ID: HRGMv2_0156_1_1065
Type: TC
Location: 1259539 - 1261158 (-)
Type: TC
Location: 1259539 - 1261158 (-)
Gene ID: HRGMv2_0156_1_1066
Type:
Location: 1261228 - 1261374 (-)
Type:
Location: 1261228 - 1261374 (-)
Gene ID: HRGMv2_0156_1_1067
Type: TC
Location: 1261424 - 1262005 (+)
Type: TC
Location: 1261424 - 1262005 (+)
Gene ID: HRGMv2_0156_1_1068
Type: pfam
Location: 1262045 - 1263229 (+)
Type: pfam
Location: 1262045 - 1263229 (+)
Gene ID: HRGMv2_0156_1_1069
Type: pfam
Location: 1263368 - 1264507 (+)
Type: pfam
Location: 1263368 - 1264507 (+)
Gene ID: HRGMv2_0156_1_1070
Type: TC
Location: 1264594 - 1266312 (-)
Type: TC
Location: 1264594 - 1266312 (-)
Gene ID: HRGMv2_0156_1_1071
Type: TC
Location: 1266324 - 1269068 (-)
Type: TC
Location: 1266324 - 1269068 (-)
Gene ID: HRGMv2_0156_1_1072
Type: CAZyme
Location: 1269167 - 1271242 (-)
Type: CAZyme
Location: 1269167 - 1271242 (-)
Gene ID: HRGMv2_0156_1_1073
Type: CAZyme
Location: 1271242 - 1273566 (-)
Type: CAZyme
Location: 1271242 - 1273566 (-)
Gene ID: HRGMv2_0156_1_1074
Type: CAZyme
Location: 1273601 - 1276192 (-)
Type: CAZyme
Location: 1273601 - 1276192 (-)
Gene ID: HRGMv2_0156_1_1075
Type: CAZyme
Location: 1276349 - 1277983 (-)
Type: CAZyme
Location: 1276349 - 1277983 (-)
Gene ID: HRGMv2_0156_1_1076
Type: pfam
Location: 1278602 - 1279765 (+)
Type: pfam
Location: 1278602 - 1279765 (+)
Gene ID: HRGMv2_0156_1_1077
Type: TC
Location: 1279818 - 1283042 (+)
Type: TC
Location: 1279818 - 1283042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.