Cluster: HRGMv2_0156_CGC18
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_01124
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_861 | 1068300 | 1069412 | + | GT94 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_862 | 1069405 | 1070859 | + | 2.A.66.2.23 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_863 | 1070862 | 1071773 | + | GT101 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_864 | 1071838 | 1072965 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_865 | 1073005 | 1074162 | + | GT4 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_866 | 1074177 | 1075031 | + | GT2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_867 | 1075045 | 1076544 | + | Polysacc_deac_3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_868 | 1076647 | 1077861 | + | GT2 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_869 | 1077934 | 1080555 | + | HATPase_c | HisKA | Response_reg |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_870 | 1080633 | 1081733 | + | Exo_endo_phos |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_871 | 1081866 | 1085252 | - | 1.B.14.6.3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_872 | 1085469 | 1087160 | - | 3.A.1.120.6 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_873 | 1087427 | 1089298 | - | HATPase_c | HisKA |
| peptidase | HRGMv2_0156_1 | HRGMv2_0156_1_874 | 1089491 | 1090876 | - | S09.UPW |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_875 | 1090968 | 1092320 | + | 2.A.66.1.13 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_876 | 1092483 | 1093199 | + | 9.B.186.1.3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_877 | 1093177 | 1093920 | + | GT51 |
Gene ID: HRGMv2_0156_1_861
Type: CAZyme
Location: 1068300 - 1069412 (+)
Type: CAZyme
Location: 1068300 - 1069412 (+)
Gene ID: HRGMv2_0156_1_862
Type: TC
Location: 1069405 - 1070859 (+)
Type: TC
Location: 1069405 - 1070859 (+)
Gene ID: HRGMv2_0156_1_863
Type: CAZyme
Location: 1070862 - 1071773 (+)
Type: CAZyme
Location: 1070862 - 1071773 (+)
Gene ID: HRGMv2_0156_1_864
Type:
Location: 1071838 - 1072965 (+)
Type:
Location: 1071838 - 1072965 (+)
Gene ID: HRGMv2_0156_1_865
Type: CAZyme
Location: 1073005 - 1074162 (+)
Type: CAZyme
Location: 1073005 - 1074162 (+)
Gene ID: HRGMv2_0156_1_866
Type: CAZyme
Location: 1074177 - 1075031 (+)
Type: CAZyme
Location: 1074177 - 1075031 (+)
Gene ID: HRGMv2_0156_1_867
Type: pfam
Location: 1075045 - 1076544 (+)
Type: pfam
Location: 1075045 - 1076544 (+)
Gene ID: HRGMv2_0156_1_868
Type: CAZyme
Location: 1076647 - 1077861 (+)
Type: CAZyme
Location: 1076647 - 1077861 (+)
Gene ID: HRGMv2_0156_1_869
Type: STP
Location: 1077934 - 1080555 (+)
Type: STP
Location: 1077934 - 1080555 (+)
Gene ID: HRGMv2_0156_1_870
Type: pfam
Location: 1080633 - 1081733 (+)
Type: pfam
Location: 1080633 - 1081733 (+)
Gene ID: HRGMv2_0156_1_871
Type: TC
Location: 1081866 - 1085252 (-)
Type: TC
Location: 1081866 - 1085252 (-)
Gene ID: HRGMv2_0156_1_872
Type: TC
Location: 1085469 - 1087160 (-)
Type: TC
Location: 1085469 - 1087160 (-)
Gene ID: HRGMv2_0156_1_873
Type: STP
Location: 1087427 - 1089298 (-)
Type: STP
Location: 1087427 - 1089298 (-)
Gene ID: HRGMv2_0156_1_874
Type: peptidase
Location: 1089491 - 1090876 (-)
Type: peptidase
Location: 1089491 - 1090876 (-)
Gene ID: HRGMv2_0156_1_875
Type: TC
Location: 1090968 - 1092320 (+)
Type: TC
Location: 1090968 - 1092320 (+)
Gene ID: HRGMv2_0156_1_876
Type: TC
Location: 1092483 - 1093199 (+)
Type: TC
Location: 1092483 - 1093199 (+)
Gene ID: HRGMv2_0156_1_877
Type: CAZyme
Location: 1093177 - 1093920 (+)
Type: CAZyme
Location: 1093177 - 1093920 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_863 | vegan > omnivore | 2.02921 | 0.00026 |
| HRGMv2_0156_1_864 | vegan > omnivore | 2.30868 | 0.00026 |
| HRGMv2_0156_1_865 | vegan > omnivore | 2.16794 | 0.00026 |
| HRGMv2_0156_1_866 | vegan > omnivore | 1.53091 | 0.00026 |
| HRGMv2_0156_1_867 | vegan > omnivore | 1.99836 | 0.00026 |
| HRGMv2_0156_1_871 | vegan > omnivore | 1.36536 | 0.00026 |
| HRGMv2_0156_1_871 | vegetarian > omnivore | 1.67571 | 0.00153 |