Cluster: HRGMv2_0156_CGC15
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 10
- Substrate: arabinogalactan/pectin
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00212
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_744 | 915227 | 917695 | + | GH95 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_745 | 917709 | 918911 | + | GH105 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_746 | 918932 | 920398 | + | GH140 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_747 | 920430 | 924290 | + | CBM67 | GH33 | GH78 |
| sulfatase | HRGMv2_0156_1 | HRGMv2_0156_1_748 | 924403 | 925290 | + | S1_6 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_749 | 925370 | 926161 | - | Patatin |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_750 | 926364 | 928328 | - | CE19 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_751 | 928335 | 929675 | - | GH28 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_752 | 929876 | 932710 | - | CBM67 | GH78 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_753 | 932864 | 936184 | - | GH142 | GH143 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_754 | 936216 | 937139 | - | GH43_18 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_755 | 937345 | 938013 | - | DUF3826 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_756 | 938016 | 939755 | - | PL1_2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_757 | 939961 | 942174 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_758 | 942187 | 945573 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0156_1_744
Type: CAZyme
Location: 915227 - 917695 (+)
Type: CAZyme
Location: 915227 - 917695 (+)
Gene ID: HRGMv2_0156_1_745
Type: CAZyme
Location: 917709 - 918911 (+)
Type: CAZyme
Location: 917709 - 918911 (+)
Gene ID: HRGMv2_0156_1_746
Type: CAZyme
Location: 918932 - 920398 (+)
Type: CAZyme
Location: 918932 - 920398 (+)
Gene ID: HRGMv2_0156_1_747
Type: CAZyme
Location: 920430 - 924290 (+)
Type: CAZyme
Location: 920430 - 924290 (+)
Gene ID: HRGMv2_0156_1_748
Type: sulfatase
Location: 924403 - 925290 (+)
Type: sulfatase
Location: 924403 - 925290 (+)
Gene ID: HRGMv2_0156_1_749
Type: pfam
Location: 925370 - 926161 (-)
Type: pfam
Location: 925370 - 926161 (-)
Gene ID: HRGMv2_0156_1_750
Type: CAZyme
Location: 926364 - 928328 (-)
Type: CAZyme
Location: 926364 - 928328 (-)
Gene ID: HRGMv2_0156_1_751
Type: CAZyme
Location: 928335 - 929675 (-)
Type: CAZyme
Location: 928335 - 929675 (-)
Gene ID: HRGMv2_0156_1_752
Type: CAZyme
Location: 929876 - 932710 (-)
Type: CAZyme
Location: 929876 - 932710 (-)
Gene ID: HRGMv2_0156_1_753
Type: CAZyme
Location: 932864 - 936184 (-)
Type: CAZyme
Location: 932864 - 936184 (-)
Gene ID: HRGMv2_0156_1_754
Type: CAZyme
Location: 936216 - 937139 (-)
Type: CAZyme
Location: 936216 - 937139 (-)
Gene ID: HRGMv2_0156_1_755
Type: pfam
Location: 937345 - 938013 (-)
Type: pfam
Location: 937345 - 938013 (-)
Gene ID: HRGMv2_0156_1_756
Type: CAZyme
Location: 938016 - 939755 (-)
Type: CAZyme
Location: 938016 - 939755 (-)
Gene ID: HRGMv2_0156_1_757
Type: pfam
Location: 939961 - 942174 (-)
Type: pfam
Location: 939961 - 942174 (-)
Gene ID: HRGMv2_0156_1_758
Type: TC
Location: 942187 - 945573 (-)
Type: TC
Location: 942187 - 945573 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_757 | vegan > omnivore | 1.72134 | 0.00026 |
| HRGMv2_0156_1_758 | vegan > omnivore | 2.10803 | 0.00026 |