Cluster: HRGMv2_0156_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00030
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_708 | 861811 | 865311 | - | 1.B.14.6.1 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_709 | 865512 | 866519 | - | FecR |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_710 | 866527 | 867192 | - | GerE |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_711 | 867343 | 869547 | - | GH78 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_712 | 869710 | 871569 | - | GH141 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_713 | 871605 | 873701 | - | GH127 |
Gene ID: HRGMv2_0156_1_708
Type: TC
Location: 861811 - 865311 (-)
Type: TC
Location: 861811 - 865311 (-)
Gene ID: HRGMv2_0156_1_709
Type: STP
Location: 865512 - 866519 (-)
Type: STP
Location: 865512 - 866519 (-)
Gene ID: HRGMv2_0156_1_710
Type: TF
Location: 866527 - 867192 (-)
Type: TF
Location: 866527 - 867192 (-)
Gene ID: HRGMv2_0156_1_711
Type: CAZyme
Location: 867343 - 869547 (-)
Type: CAZyme
Location: 867343 - 869547 (-)
Gene ID: HRGMv2_0156_1_712
Type: CAZyme
Location: 869710 - 871569 (-)
Type: CAZyme
Location: 869710 - 871569 (-)
Gene ID: HRGMv2_0156_1_713
Type: CAZyme
Location: 871605 - 873701 (-)
Type: CAZyme
Location: 871605 - 873701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_708 | vegan > omnivore | 1.21347 | 0.00026 |
| HRGMv2_0156_1_709 | vegan > omnivore | 1.08975 | 0.00026 |