Cluster: HRGMv2_0156_CGC111
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0156
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4961 | 6473830 | 6475479 | - | GH32 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4962 | 6475680 | 6476876 | - | GH76 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_4963 | 6476972 | 6477778 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4964 | 6477819 | 6479873 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4965 | 6479910 | 6483089 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4966 | 6483209 | 6485053 | - | CarboxypepD_reg | CarboxypepD_reg | CarbopepD_reg_2 | CarbopepD_reg_2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4967 | 6485527 | 6488067 | + | Kelch_KLHDC2_KLHL20_DRC7 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4968 | 6488506 | 6490005 | - | 2.A.14.1.2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4969 | 6490098 | 6491549 | - | OmpA | DUF3868 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4970 | 6491574 | 6492161 | - | 9.B.171.1.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4971 | 6492411 | 6493955 | + | 3.B.1.1.5 |
| sulfatase | HRGMv2_0156_1 | HRGMv2_0156_1_4972 | 6494034 | 6495545 | + | S1_37 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4973 | 6495575 | 6496099 | + | Biotin_lipoyl | Biotin_lipoyl_2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4974 | 6496188 | 6498545 | + | 2.A.21.9.2 |
Gene ID: HRGMv2_0156_1_4961
Type: CAZyme
Location: 6473830 - 6475479 (-)
Type: CAZyme
Location: 6473830 - 6475479 (-)
Gene ID: HRGMv2_0156_1_4962
Type: CAZyme
Location: 6475680 - 6476876 (-)
Type: CAZyme
Location: 6475680 - 6476876 (-)
Gene ID: HRGMv2_0156_1_4963
Type:
Location: 6476972 - 6477778 (-)
Type:
Location: 6476972 - 6477778 (-)
Gene ID: HRGMv2_0156_1_4964
Type: pfam
Location: 6477819 - 6479873 (-)
Type: pfam
Location: 6477819 - 6479873 (-)
Gene ID: HRGMv2_0156_1_4965
Type: TC
Location: 6479910 - 6483089 (-)
Type: TC
Location: 6479910 - 6483089 (-)
Gene ID: HRGMv2_0156_1_4966
Type: pfam
Location: 6483209 - 6485053 (-)
Type: pfam
Location: 6483209 - 6485053 (-)
Gene ID: HRGMv2_0156_1_4967
Type: pfam
Location: 6485527 - 6488067 (+)
Type: pfam
Location: 6485527 - 6488067 (+)
Gene ID: HRGMv2_0156_1_4968
Type: TC
Location: 6488506 - 6490005 (-)
Type: TC
Location: 6488506 - 6490005 (-)
Gene ID: HRGMv2_0156_1_4969
Type: pfam
Location: 6490098 - 6491549 (-)
Type: pfam
Location: 6490098 - 6491549 (-)
Gene ID: HRGMv2_0156_1_4970
Type: TC
Location: 6491574 - 6492161 (-)
Type: TC
Location: 6491574 - 6492161 (-)
Gene ID: HRGMv2_0156_1_4971
Type: TC
Location: 6492411 - 6493955 (+)
Type: TC
Location: 6492411 - 6493955 (+)
Gene ID: HRGMv2_0156_1_4972
Type: sulfatase
Location: 6494034 - 6495545 (+)
Type: sulfatase
Location: 6494034 - 6495545 (+)
Gene ID: HRGMv2_0156_1_4973
Type: pfam
Location: 6495575 - 6496099 (+)
Type: pfam
Location: 6495575 - 6496099 (+)
Gene ID: HRGMv2_0156_1_4974
Type: TC
Location: 6496188 - 6498545 (+)
Type: TC
Location: 6496188 - 6498545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_4964 | vegan > omnivore | 1.21158 | 0.00026 |
| HRGMv2_0156_1_4964 | vegetarian > omnivore | 1.16418 | 0.00153 |
| HRGMv2_0156_1_4965 | vegan > omnivore | 2.00971 | 0.00026 |
| HRGMv2_0156_1_4965 | vegetarian > omnivore | 1.41778 | 0.00153 |
| HRGMv2_0156_1_4967 | vegetarian > omnivore | 2.33256 | 0.00153 |
| HRGMv2_0156_1_4967 | vegan > omnivore | 2.03521 | 0.00026 |