Cluster: HRGMv2_0156_CGC106
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00044
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4720 | 6161950 | 6163950 | + | GH13_14 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_4721 | 6164031 | 6168164 | - | HTH_AraC |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4722 | 6168560 | 6171733 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4723 | 6171753 | 6173399 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4724 | 6173414 | 6174817 | + | SGBP_B_XBD |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4725 | 6174842 | 6177064 | + | GH10 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4726 | 6177397 | 6179055 | + | CE20 | CE20 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4727 | 6179072 | 6180487 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4728 | 6180527 | 6181657 | + | GH10 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4729 | 6181684 | 6182661 | + | GH43_1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4730 | 6182827 | 6184962 | + | GH67 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4731 | 6185070 | 6186524 | + | 3.A.1.131.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4732 | 6186560 | 6188380 | - | 2.A.21.9.2 |
Gene ID: HRGMv2_0156_1_4720
Type: CAZyme
Location: 6161950 - 6163950 (+)
Type: CAZyme
Location: 6161950 - 6163950 (+)
Gene ID: HRGMv2_0156_1_4721
Type: TF
Location: 6164031 - 6168164 (-)
Type: TF
Location: 6164031 - 6168164 (-)
Gene ID: HRGMv2_0156_1_4722
Type: TC
Location: 6168560 - 6171733 (+)
Type: TC
Location: 6168560 - 6171733 (+)
Gene ID: HRGMv2_0156_1_4723
Type: pfam
Location: 6171753 - 6173399 (+)
Type: pfam
Location: 6171753 - 6173399 (+)
Gene ID: HRGMv2_0156_1_4724
Type: pfam
Location: 6173414 - 6174817 (+)
Type: pfam
Location: 6173414 - 6174817 (+)
Gene ID: HRGMv2_0156_1_4725
Type: CAZyme
Location: 6174842 - 6177064 (+)
Type: CAZyme
Location: 6174842 - 6177064 (+)
Gene ID: HRGMv2_0156_1_4726
Type: CAZyme
Location: 6177397 - 6179055 (+)
Type: CAZyme
Location: 6177397 - 6179055 (+)
Gene ID: HRGMv2_0156_1_4727
Type: TC
Location: 6179072 - 6180487 (+)
Type: TC
Location: 6179072 - 6180487 (+)
Gene ID: HRGMv2_0156_1_4728
Type: CAZyme
Location: 6180527 - 6181657 (+)
Type: CAZyme
Location: 6180527 - 6181657 (+)
Gene ID: HRGMv2_0156_1_4729
Type: CAZyme
Location: 6181684 - 6182661 (+)
Type: CAZyme
Location: 6181684 - 6182661 (+)
Gene ID: HRGMv2_0156_1_4730
Type: CAZyme
Location: 6182827 - 6184962 (+)
Type: CAZyme
Location: 6182827 - 6184962 (+)
Gene ID: HRGMv2_0156_1_4731
Type: TC
Location: 6185070 - 6186524 (+)
Type: TC
Location: 6185070 - 6186524 (+)
Gene ID: HRGMv2_0156_1_4732
Type: TC
Location: 6186560 - 6188380 (-)
Type: TC
Location: 6186560 - 6188380 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_4721 | vegan > omnivore | 1.04604 | 0.00026 |
| HRGMv2_0156_1_4721 | vegetarian > omnivore | 1.26182 | 0.00153 |
| HRGMv2_0156_1_4723 | vegan > omnivore | 1.11113 | 0.00026 |
| HRGMv2_0156_1_4723 | vegetarian > omnivore | 1.22776 | 0.00153 |
| HRGMv2_0156_1_4724 | vegan > omnivore | 1.09452 | 0.00026 |
| HRGMv2_0156_1_4725 | vegan > omnivore | 1.10703 | 0.00026 |
| HRGMv2_0156_1_4725 | vegetarian > omnivore | 1.25428 | 0.00153 |
| HRGMv2_0156_1_4726 | vegan > omnivore | 1.05605 | 0.00026 |
| HRGMv2_0156_1_4727 | vegan > omnivore | 1.74696 | 0.00026 |
| HRGMv2_0156_1_4727 | vegetarian > omnivore | 1.37081 | 0.00153 |
| HRGMv2_0156_1_4728 | vegan > omnivore | 1.13443 | 0.00026 |