Cluster: HRGMv2_0156_CGC105
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_08825
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4617 | 6015352 | 6017340 | - | 8.A.46.2.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4618 | 6017352 | 6020630 | - | 1.B.14.6.2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4619 | 6021080 | 6023662 | - | Kelch_KLHDC2_KLHL20_DRC7 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4620 | 6023861 | 6026122 | - | GH92 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4621 | 6026158 | 6029370 | - | GH2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4622 | 6029781 | 6032291 | + | CBM6 | CBM6 | GH43_2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4623 | 6032512 | 6033285 | + | Ubie_methyltran | TehB | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4624 | 6033444 | 6035306 | + | GH32 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4625 | 6035382 | 6036254 | - | Aldose_epim |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4626 | 6036283 | 6037155 | - | Bro-N |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4627 | 6037447 | 6040560 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4628 | 6040588 | 6042300 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4629 | 6042327 | 6043712 | + | DUF4960 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4630 | 6043739 | 6045298 | + | GH32 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4631 | 6045399 | 6047234 | + | GH32 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4632 | 6047618 | 6048787 | + | 2.A.1.7.17 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_4633 | 6048823 | 6049710 | + | PfkB |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4634 | 6050097 | 6055679 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0156_1_4617
Type: TC
Location: 6015352 - 6017340 (-)
Type: TC
Location: 6015352 - 6017340 (-)
Gene ID: HRGMv2_0156_1_4618
Type: TC
Location: 6017352 - 6020630 (-)
Type: TC
Location: 6017352 - 6020630 (-)
Gene ID: HRGMv2_0156_1_4619
Type: pfam
Location: 6021080 - 6023662 (-)
Type: pfam
Location: 6021080 - 6023662 (-)
Gene ID: HRGMv2_0156_1_4620
Type: CAZyme
Location: 6023861 - 6026122 (-)
Type: CAZyme
Location: 6023861 - 6026122 (-)
Gene ID: HRGMv2_0156_1_4621
Type: CAZyme
Location: 6026158 - 6029370 (-)
Type: CAZyme
Location: 6026158 - 6029370 (-)
Gene ID: HRGMv2_0156_1_4622
Type: CAZyme
Location: 6029781 - 6032291 (+)
Type: CAZyme
Location: 6029781 - 6032291 (+)
Gene ID: HRGMv2_0156_1_4623
Type: pfam
Location: 6032512 - 6033285 (+)
Type: pfam
Location: 6032512 - 6033285 (+)
Gene ID: HRGMv2_0156_1_4624
Type: CAZyme
Location: 6033444 - 6035306 (+)
Type: CAZyme
Location: 6033444 - 6035306 (+)
Gene ID: HRGMv2_0156_1_4625
Type: pfam
Location: 6035382 - 6036254 (-)
Type: pfam
Location: 6035382 - 6036254 (-)
Gene ID: HRGMv2_0156_1_4626
Type: pfam
Location: 6036283 - 6037155 (-)
Type: pfam
Location: 6036283 - 6037155 (-)
Gene ID: HRGMv2_0156_1_4627
Type: TC
Location: 6037447 - 6040560 (+)
Type: TC
Location: 6037447 - 6040560 (+)
Gene ID: HRGMv2_0156_1_4628
Type: pfam
Location: 6040588 - 6042300 (+)
Type: pfam
Location: 6040588 - 6042300 (+)
Gene ID: HRGMv2_0156_1_4629
Type: pfam
Location: 6042327 - 6043712 (+)
Type: pfam
Location: 6042327 - 6043712 (+)
Gene ID: HRGMv2_0156_1_4630
Type: CAZyme
Location: 6043739 - 6045298 (+)
Type: CAZyme
Location: 6043739 - 6045298 (+)
Gene ID: HRGMv2_0156_1_4631
Type: CAZyme
Location: 6045399 - 6047234 (+)
Type: CAZyme
Location: 6045399 - 6047234 (+)
Gene ID: HRGMv2_0156_1_4632
Type: TC
Location: 6047618 - 6048787 (+)
Type: TC
Location: 6047618 - 6048787 (+)
Gene ID: HRGMv2_0156_1_4633
Type: STP
Location: 6048823 - 6049710 (+)
Type: STP
Location: 6048823 - 6049710 (+)
Gene ID: HRGMv2_0156_1_4634
Type: TC
Location: 6050097 - 6055679 (+)
Type: TC
Location: 6050097 - 6055679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_4626 | vegan > omnivore | 3.69440 | 0.00026 |
| HRGMv2_0156_1_4626 | vegetarian > omnivore | 1.85150 | 0.00153 |