Cluster: HRGMv2_0112_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0112
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0112_19 | HRGMv2_0112_19_11 | 9413 | 10336 | + | 3.A.1.105.9 |
| pfam | HRGMv2_0112_19 | HRGMv2_0112_19_12 | 10323 | 11084 | + | ABC2_membrane | ABC2_membrane_3 |
| STP | HRGMv2_0112_19 | HRGMv2_0112_19_13 | 11107 | 11823 | + | TetR_C | TetR_N |
| CAZyme | HRGMv2_0112_19 | HRGMv2_0112_19_14 | 11820 | 12953 | - | GT1 |
Gene ID: HRGMv2_0112_19_11
Type: TC
Location: 9413 - 10336 (+)
Type: TC
Location: 9413 - 10336 (+)
Gene ID: HRGMv2_0112_19_12
Type: pfam
Location: 10323 - 11084 (+)
Type: pfam
Location: 10323 - 11084 (+)
Gene ID: HRGMv2_0112_19_13
Type: STP
Location: 11107 - 11823 (+)
Type: STP
Location: 11107 - 11823 (+)
Gene ID: HRGMv2_0112_19_14
Type: CAZyme
Location: 11820 - 12953 (-)
Type: CAZyme
Location: 11820 - 12953 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia sp958349165
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0112_19_12 | vegan > omnivore | 1.11667 | 0.01856 |