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Cluster: HRGMv2_0094_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0094_3 HRGMv2_0094_3_42 46482 48275 + 3.A.1.106.15
CAZyme HRGMv2_0094_3 HRGMv2_0094_3_43 48317 49495 - GT4
NULL(UNKNOWN) HRGMv2_0094_3 HRGMv2_0094_3_44 49526 50758 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0094_3 HRGMv2_0094_3_45 50742 52241 - GT4
NULL(UNKNOWN) HRGMv2_0094_3 HRGMv2_0094_3_46 52252 53178 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0094_3 HRGMv2_0094_3_47 53239 53409 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0094_3 HRGMv2_0094_3_48 53406 54557 - GT4
CAZyme HRGMv2_0094_3 HRGMv2_0094_3_49 54610 55719 - GT4
pfam HRGMv2_0094_3 HRGMv2_0094_3_50 55840 56904 + Epimerase_2
CAZyme HRGMv2_0094_3 HRGMv2_0094_3_51 56948 58075 + GT4
Gene ID: HRGMv2_0094_3_42
Type: TC
Location: 46482 - 48275 (+)
Gene ID: HRGMv2_0094_3_43
Type: CAZyme
Location: 48317 - 49495 (-)
Gene ID: HRGMv2_0094_3_44
Type:
Location: 49526 - 50758 (+)
Gene ID: HRGMv2_0094_3_45
Type: CAZyme
Location: 50742 - 52241 (-)
Gene ID: HRGMv2_0094_3_46
Type:
Location: 52252 - 53178 (-)
Gene ID: HRGMv2_0094_3_47
Type:
Location: 53239 - 53409 (+)
Gene ID: HRGMv2_0094_3_48
Type: CAZyme
Location: 53406 - 54557 (-)
Gene ID: HRGMv2_0094_3_49
Type: CAZyme
Location: 54610 - 55719 (-)
Gene ID: HRGMv2_0094_3_50
Type: pfam
Location: 55840 - 56904 (+)
Gene ID: HRGMv2_0094_3_51
Type: CAZyme
Location: 56948 - 58075 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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