Cluster: HRGMv2_0092_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0092
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0092_2 | HRGMv2_0092_2_182 | 220943 | 222055 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0092_2 | HRGMv2_0092_2_183 | 222052 | 223491 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0092_2 | HRGMv2_0092_2_184 | 223494 | 224840 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_0092_2 | HRGMv2_0092_2_185 | 224830 | 225951 | + | GT28 |
Gene ID: HRGMv2_0092_2_182
Type: TC
Location: 220943 - 222055 (+)
Type: TC
Location: 220943 - 222055 (+)
Gene ID: HRGMv2_0092_2_183
Type: pfam
Location: 222052 - 223491 (+)
Type: pfam
Location: 222052 - 223491 (+)
Gene ID: HRGMv2_0092_2_184
Type: TC
Location: 223494 - 224840 (+)
Type: TC
Location: 223494 - 224840 (+)
Gene ID: HRGMv2_0092_2_185
Type: CAZyme
Location: 224830 - 225951 (+)
Type: CAZyme
Location: 224830 - 225951 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.