Cluster: HRGMv2_0092_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0092
- CGC Family ID: CGCFAM_01028
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0092_1 | HRGMv2_0092_1_113 | 136118 | 137092 | + | 3.A.1.1.7 |
| TC | HRGMv2_0092_1 | HRGMv2_0092_1_114 | 137109 | 138008 | + | 3.A.1.1.11 |
| STP | HRGMv2_0092_1 | HRGMv2_0092_1_115 | 138031 | 139380 | + | SBP_bac_1 |
| CAZyme | HRGMv2_0092_1 | HRGMv2_0092_1_116 | 139413 | 141038 | + | GH36 |
Gene ID: HRGMv2_0092_1_113
Type: TC
Location: 136118 - 137092 (+)
Type: TC
Location: 136118 - 137092 (+)
Gene ID: HRGMv2_0092_1_114
Type: TC
Location: 137109 - 138008 (+)
Type: TC
Location: 137109 - 138008 (+)
Gene ID: HRGMv2_0092_1_115
Type: STP
Location: 138031 - 139380 (+)
Type: STP
Location: 138031 - 139380 (+)
Gene ID: HRGMv2_0092_1_116
Type: CAZyme
Location: 139413 - 141038 (+)
Type: CAZyme
Location: 139413 - 141038 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.