Cluster: HRGMv2_0081_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0081
- CGC Family ID: CGCFAM_05078
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0081_13 | HRGMv2_0081_13_23 | 31583 | 35458 | + | GH110 |
| CAZyme | HRGMv2_0081_13 | HRGMv2_0081_13_24 | 35562 | 37805 | - | GH13_11 |
| NULL(UNKNOWN) | HRGMv2_0081_13 | HRGMv2_0081_13_25 | 37878 | 38546 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0081_13 | HRGMv2_0081_13_26 | 38543 | 39853 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0081_13 | HRGMv2_0081_13_27 | 39850 | 40581 | - | 3.A.1.148.3 |
Gene ID: HRGMv2_0081_13_23
Type: CAZyme
Location: 31583 - 35458 (+)
Type: CAZyme
Location: 31583 - 35458 (+)
Gene ID: HRGMv2_0081_13_24
Type: CAZyme
Location: 35562 - 37805 (-)
Type: CAZyme
Location: 35562 - 37805 (-)
Gene ID: HRGMv2_0081_13_25
Type:
Location: 37878 - 38546 (-)
Type:
Location: 37878 - 38546 (-)
Gene ID: HRGMv2_0081_13_26
Type:
Location: 38543 - 39853 (-)
Type:
Location: 38543 - 39853 (-)
Gene ID: HRGMv2_0081_13_27
Type: TC
Location: 39850 - 40581 (-)
Type: TC
Location: 39850 - 40581 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum sp902468275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.