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Cluster: HRGMv2_0073_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0073_3 HRGMv2_0073_3_3 6298 8370 - GH73
CAZyme HRGMv2_0073_3 HRGMv2_0073_3_4 8662 9903 - GT4
pfam HRGMv2_0073_3 HRGMv2_0073_3_5 9897 11180 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_0073_3 HRGMv2_0073_3_6 11200 12387 + GT4
pfam HRGMv2_0073_3 HRGMv2_0073_3_7 12472 13755 - Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_0073_3 HRGMv2_0073_3_8 13855 15054 + GT4
TF HRGMv2_0073_3 HRGMv2_0073_3_9 15231 17066 + 0040586
TC HRGMv2_0073_3 HRGMv2_0073_3_10 17063 18037 + 2.A.7.18.1
Gene ID: HRGMv2_0073_3_3
Type: CAZyme
Location: 6298 - 8370 (-)
Gene ID: HRGMv2_0073_3_4
Type: CAZyme
Location: 8662 - 9903 (-)
Gene ID: HRGMv2_0073_3_5
Type: pfam
Location: 9897 - 11180 (-)
Gene ID: HRGMv2_0073_3_6
Type: CAZyme
Location: 11200 - 12387 (+)
Gene ID: HRGMv2_0073_3_7
Type: pfam
Location: 12472 - 13755 (-)
Gene ID: HRGMv2_0073_3_8
Type: CAZyme
Location: 13855 - 15054 (+)
Gene ID: HRGMv2_0073_3_9
Type: TF
Location: 15231 - 17066 (+)
Gene ID: HRGMv2_0073_3_10
Type: TC
Location: 17063 - 18037 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0073_3_10 vegan > omnivore 1.09630 0.03731

🧭 Explore Read Mapping of CGC

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