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Cluster: HRGMv2_0073_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_58 59254 60402 - GT4
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_59 60512 61612 + GT4
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_60 61609 62694 + GT2
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_61 62805 64079 + GT4
pfam HRGMv2_0073_1 HRGMv2_0073_1_62 64072 64998 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_63 64988 65956 + GT2
TC HRGMv2_0073_1 HRGMv2_0073_1_64 65988 66923 + 3.A.1.103.4
TC HRGMv2_0073_1 HRGMv2_0073_1_65 66923 68098 + 3.A.1.103.5
pfam HRGMv2_0073_1 HRGMv2_0073_1_66 68231 69238 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_67 69252 70217 + GT2
NULL(UNKNOWN) HRGMv2_0073_1 HRGMv2_0073_1_68 70246 70977 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0073_1 HRGMv2_0073_1_69 71169 71465 + Whib
CAZyme HRGMv2_0073_1 HRGMv2_0073_1_70 71558 74620 + GT2
Gene ID: HRGMv2_0073_1_58
Type: CAZyme
Location: 59254 - 60402 (-)
Gene ID: HRGMv2_0073_1_59
Type: CAZyme
Location: 60512 - 61612 (+)
Gene ID: HRGMv2_0073_1_60
Type: CAZyme
Location: 61609 - 62694 (+)
Gene ID: HRGMv2_0073_1_61
Type: CAZyme
Location: 62805 - 64079 (+)
Gene ID: HRGMv2_0073_1_62
Type: pfam
Location: 64072 - 64998 (+)
Gene ID: HRGMv2_0073_1_63
Type: CAZyme
Location: 64988 - 65956 (+)
Gene ID: HRGMv2_0073_1_64
Type: TC
Location: 65988 - 66923 (+)
Gene ID: HRGMv2_0073_1_65
Type: TC
Location: 66923 - 68098 (+)
Gene ID: HRGMv2_0073_1_66
Type: pfam
Location: 68231 - 69238 (+)
Gene ID: HRGMv2_0073_1_67
Type: CAZyme
Location: 69252 - 70217 (+)
Gene ID: HRGMv2_0073_1_68
Type:
Location: 70246 - 70977 (-)
Gene ID: HRGMv2_0073_1_69
Type: TF
Location: 71169 - 71465 (+)
Gene ID: HRGMv2_0073_1_70
Type: CAZyme
Location: 71558 - 74620 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0073_1_69 omnivore > vegetarian 19.40807 0.01321

🧭 Explore Read Mapping of CGC

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