Cluster: HRGMv2_0063_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0063
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0063_2 | HRGMv2_0063_2_71 | 80344 | 82335 | - | 4.A.1.2.12 |
| CAZyme | HRGMv2_0063_2 | HRGMv2_0063_2_72 | 82578 | 84119 | - | GH32 |
| pfam | HRGMv2_0063_2 | HRGMv2_0063_2_73 | 84289 | 84663 | - | Ribosomal_L12 | Ribosomal_L12_N |
| pfam | HRGMv2_0063_2 | HRGMv2_0063_2_74 | 84816 | 85346 | - | Ribosomal_L10 |
| TC | HRGMv2_0063_2 | HRGMv2_0063_2_75 | 85753 | 86949 | - | 3.A.1.11.6 |
| TC | HRGMv2_0063_2 | HRGMv2_0063_2_76 | 87018 | 87992 | - | 2.A.16.1.1 |
| TC | HRGMv2_0063_2 | HRGMv2_0063_2_77 | 88286 | 88981 | - | 1.C.82.1.1 |
Gene ID: HRGMv2_0063_2_71
Type: TC
Location: 80344 - 82335 (-)
Type: TC
Location: 80344 - 82335 (-)
Gene ID: HRGMv2_0063_2_72
Type: CAZyme
Location: 82578 - 84119 (-)
Type: CAZyme
Location: 82578 - 84119 (-)
Gene ID: HRGMv2_0063_2_73
Type: pfam
Location: 84289 - 84663 (-)
Type: pfam
Location: 84289 - 84663 (-)
Gene ID: HRGMv2_0063_2_74
Type: pfam
Location: 84816 - 85346 (-)
Type: pfam
Location: 84816 - 85346 (-)
Gene ID: HRGMv2_0063_2_75
Type: TC
Location: 85753 - 86949 (-)
Type: TC
Location: 85753 - 86949 (-)
Gene ID: HRGMv2_0063_2_76
Type: TC
Location: 87018 - 87992 (-)
Type: TC
Location: 87018 - 87992 (-)
Gene ID: HRGMv2_0063_2_77
Type: TC
Location: 88286 - 88981 (-)
Type: TC
Location: 88286 - 88981 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia mucilaginosa_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.