Cluster: HRGMv2_0063_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0063
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0063_1 | HRGMv2_0063_1_250 | 347180 | 348442 | - | 9.A.47.2.1 |
| TC | HRGMv2_0063_1 | HRGMv2_0063_1_251 | 348907 | 349680 | - | 3.A.1.103.5 |
| pfam | HRGMv2_0063_1 | HRGMv2_0063_1_252 | 349685 | 350566 | - | ABC2_membrane |
| CAZyme | HRGMv2_0063_1 | HRGMv2_0063_1_253 | 350563 | 352569 | - | GT2 |
| pfam | HRGMv2_0063_1 | HRGMv2_0063_1_254 | 352572 | 353759 | - | Amino_oxidase | GLF | NAD_binding_8 |
| TC | HRGMv2_0063_1 | HRGMv2_0063_1_255 | 354366 | 358709 | + | 3.A.7.17.1 |
Gene ID: HRGMv2_0063_1_250
Type: TC
Location: 347180 - 348442 (-)
Type: TC
Location: 347180 - 348442 (-)
Gene ID: HRGMv2_0063_1_251
Type: TC
Location: 348907 - 349680 (-)
Type: TC
Location: 348907 - 349680 (-)
Gene ID: HRGMv2_0063_1_252
Type: pfam
Location: 349685 - 350566 (-)
Type: pfam
Location: 349685 - 350566 (-)
Gene ID: HRGMv2_0063_1_253
Type: CAZyme
Location: 350563 - 352569 (-)
Type: CAZyme
Location: 350563 - 352569 (-)
Gene ID: HRGMv2_0063_1_254
Type: pfam
Location: 352572 - 353759 (-)
Type: pfam
Location: 352572 - 353759 (-)
Gene ID: HRGMv2_0063_1_255
Type: TC
Location: 354366 - 358709 (+)
Type: TC
Location: 354366 - 358709 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia mucilaginosa_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.