Cluster: HRGMv2_0063_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0063
- CGC Family ID: CGCFAM_02621
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_18 | 17824 | 19455 | - | GT39 |
| pfam | HRGMv2_0063_12 | HRGMv2_0063_12_19 | 19628 | 20566 | + | TP_methylase |
| pfam | HRGMv2_0063_12 | HRGMv2_0063_12_20 | 20681 | 21754 | + | TatD_DNase |
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_21 | 22043 | 22867 | + | GT25 |
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_22 | 23197 | 24024 | + | GT25 |
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_23 | 24358 | 25179 | + | GT25 |
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_24 | 25284 | 26105 | + | GT25 |
| pfam | HRGMv2_0063_12 | HRGMv2_0063_12_25 | 26151 | 27023 | + | RrnaAD |
| pfam | HRGMv2_0063_12 | HRGMv2_0063_12_26 | 27092 | 28087 | + | GHMP_kinases_N | GHMP_kinases_C |
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_27 | 28172 | 29365 | + | GT4 |
| CAZyme | HRGMv2_0063_12 | HRGMv2_0063_12_28 | 29448 | 30398 | - | GT2 |
| pfam | HRGMv2_0063_12 | HRGMv2_0063_12_29 | 30391 | 30873 | - | Hexapep | Hexapep_2 |
| TC | HRGMv2_0063_12 | HRGMv2_0063_12_30 | 31025 | 32869 | - | 3.A.1.120.5 |
Gene ID: HRGMv2_0063_12_18
Type: CAZyme
Location: 17824 - 19455 (-)
Type: CAZyme
Location: 17824 - 19455 (-)
Gene ID: HRGMv2_0063_12_19
Type: pfam
Location: 19628 - 20566 (+)
Type: pfam
Location: 19628 - 20566 (+)
Gene ID: HRGMv2_0063_12_20
Type: pfam
Location: 20681 - 21754 (+)
Type: pfam
Location: 20681 - 21754 (+)
Gene ID: HRGMv2_0063_12_21
Type: CAZyme
Location: 22043 - 22867 (+)
Type: CAZyme
Location: 22043 - 22867 (+)
Gene ID: HRGMv2_0063_12_22
Type: CAZyme
Location: 23197 - 24024 (+)
Type: CAZyme
Location: 23197 - 24024 (+)
Gene ID: HRGMv2_0063_12_23
Type: CAZyme
Location: 24358 - 25179 (+)
Type: CAZyme
Location: 24358 - 25179 (+)
Gene ID: HRGMv2_0063_12_24
Type: CAZyme
Location: 25284 - 26105 (+)
Type: CAZyme
Location: 25284 - 26105 (+)
Gene ID: HRGMv2_0063_12_25
Type: pfam
Location: 26151 - 27023 (+)
Type: pfam
Location: 26151 - 27023 (+)
Gene ID: HRGMv2_0063_12_26
Type: pfam
Location: 27092 - 28087 (+)
Type: pfam
Location: 27092 - 28087 (+)
Gene ID: HRGMv2_0063_12_27
Type: CAZyme
Location: 28172 - 29365 (+)
Type: CAZyme
Location: 28172 - 29365 (+)
Gene ID: HRGMv2_0063_12_28
Type: CAZyme
Location: 29448 - 30398 (-)
Type: CAZyme
Location: 29448 - 30398 (-)
Gene ID: HRGMv2_0063_12_29
Type: pfam
Location: 30391 - 30873 (-)
Type: pfam
Location: 30391 - 30873 (-)
Gene ID: HRGMv2_0063_12_30
Type: TC
Location: 31025 - 32869 (-)
Type: TC
Location: 31025 - 32869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia mucilaginosa_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.