Cluster: HRGMv2_0063_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0063
- CGC Family ID: CGCFAM_02619
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0063_9 | HRGMv2_0063_9_36 | 54865 | 56694 | + | GH13_29 |
| pfam | HRGMv2_0063_9 | HRGMv2_0063_9_37 | 56851 | 57816 | - | OpuAC |
| TC | HRGMv2_0063_9 | HRGMv2_0063_9_38 | 57822 | 58520 | - | 3.A.1.12.3 |
| TC | HRGMv2_0063_9 | HRGMv2_0063_9_39 | 58524 | 59273 | - | 3.A.1.12.10 |
| TC | HRGMv2_0063_9 | HRGMv2_0063_9_40 | 59270 | 60220 | - | 3.A.1.12.14 |
Gene ID: HRGMv2_0063_9_36
Type: CAZyme
Location: 54865 - 56694 (+)
Type: CAZyme
Location: 54865 - 56694 (+)
Gene ID: HRGMv2_0063_9_37
Type: pfam
Location: 56851 - 57816 (-)
Type: pfam
Location: 56851 - 57816 (-)
Gene ID: HRGMv2_0063_9_38
Type: TC
Location: 57822 - 58520 (-)
Type: TC
Location: 57822 - 58520 (-)
Gene ID: HRGMv2_0063_9_39
Type: TC
Location: 58524 - 59273 (-)
Type: TC
Location: 58524 - 59273 (-)
Gene ID: HRGMv2_0063_9_40
Type: TC
Location: 59270 - 60220 (-)
Type: TC
Location: 59270 - 60220 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia mucilaginosa_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.