Cluster: HRGMv2_0061_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0061
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0061_155 | HRGMv2_0061_155_1 | 2 | 676 | + | 9.B.18.1.2 |
| NULL(UNKNOWN) | HRGMv2_0061_155 | HRGMv2_0061_155_2 | 673 | 813 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0061_155 | HRGMv2_0061_155_3 | 814 | 1938 | + | GT4 |
| CAZyme | HRGMv2_0061_155 | HRGMv2_0061_155_4 | 1935 | 3218 | + | GT4 |
| CAZyme | HRGMv2_0061_155 | HRGMv2_0061_155_5 | 3211 | 4224 | + | GT32 |
| CAZyme | HRGMv2_0061_155 | HRGMv2_0061_155_6 | 4243 | 4938 | + | GT2 |
Gene ID: HRGMv2_0061_155_1
Type: TC
Location: 2 - 676 (+)
Type: TC
Location: 2 - 676 (+)
Gene ID: HRGMv2_0061_155_2
Type:
Location: 673 - 813 (+)
Type:
Location: 673 - 813 (+)
Gene ID: HRGMv2_0061_155_3
Type: CAZyme
Location: 814 - 1938 (+)
Type: CAZyme
Location: 814 - 1938 (+)
Gene ID: HRGMv2_0061_155_4
Type: CAZyme
Location: 1935 - 3218 (+)
Type: CAZyme
Location: 1935 - 3218 (+)
Gene ID: HRGMv2_0061_155_5
Type: CAZyme
Location: 3211 - 4224 (+)
Type: CAZyme
Location: 3211 - 4224 (+)
Gene ID: HRGMv2_0061_155_6
Type: CAZyme
Location: 4243 - 4938 (+)
Type: CAZyme
Location: 4243 - 4938 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia sp916439125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0061_155_3 | vegetarian > vegan | 2.87575 | 0.02745 |
| HRGMv2_0061_155_4 | vegetarian > vegan | 3.10667 | 0.02745 |
| HRGMv2_0061_155_5 | vegetarian > vegan | 2.68842 | 0.02745 |