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Cluster: HRGMv2_0060_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0060_62 HRGMv2_0060_62_5 3969 5462 - GH13_5
TC HRGMv2_0060_62 HRGMv2_0060_62_6 5586 6464 - 3.A.1.1.33
TC HRGMv2_0060_62 HRGMv2_0060_62_7 6461 7402 - 3.A.1.1.33
STP HRGMv2_0060_62 HRGMv2_0060_62_8 7402 8709 - SBP_bac_1
pfam HRGMv2_0060_62 HRGMv2_0060_62_9 8780 9925 - ROK
CAZyme HRGMv2_0060_62 HRGMv2_0060_62_10 9989 11230 + GH20
NULL(UNKNOWN) HRGMv2_0060_62 HRGMv2_0060_62_11 11294 12265 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0060_62 HRGMv2_0060_62_12 12409 13281 + 2.A.7.2.1
Gene ID: HRGMv2_0060_62_5
Type: CAZyme
Location: 3969 - 5462 (-)
Gene ID: HRGMv2_0060_62_6
Type: TC
Location: 5586 - 6464 (-)
Gene ID: HRGMv2_0060_62_7
Type: TC
Location: 6461 - 7402 (-)
Gene ID: HRGMv2_0060_62_8
Type: STP
Location: 7402 - 8709 (-)
Gene ID: HRGMv2_0060_62_9
Type: pfam
Location: 8780 - 9925 (-)
Gene ID: HRGMv2_0060_62_10
Type: CAZyme
Location: 9989 - 11230 (+)
Gene ID: HRGMv2_0060_62_11
Type:
Location: 11294 - 12265 (-)
Gene ID: HRGMv2_0060_62_12
Type: TC
Location: 12409 - 13281 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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