Cluster: HRGMv2_0060_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0060
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0060_20 | HRGMv2_0060_20_21 | 20291 | 21505 | - | 9.A.47.2.1 |
| pfam | HRGMv2_0060_20 | HRGMv2_0060_20_22 | 21538 | 22830 | + | APH |
| pfam | HRGMv2_0060_20 | HRGMv2_0060_20_23 | 22951 | 23343 | - | DUF2304 |
| CAZyme | HRGMv2_0060_20 | HRGMv2_0060_20_24 | 23340 | 24095 | - | GT2 |
| pfam | HRGMv2_0060_20 | HRGMv2_0060_20_25 | 24096 | 24968 | - | NTP_transferase | NTP_transf_3 |
| pfam | HRGMv2_0060_20 | HRGMv2_0060_20_26 | 25164 | 26591 | + | dTDP_sugar_isom | Epimerase | RmlD_sub_bind |
| CAZyme | HRGMv2_0060_20 | HRGMv2_0060_20_27 | 27144 | 29204 | - | GH73 |
| CAZyme | HRGMv2_0060_20 | HRGMv2_0060_20_28 | 29417 | 30598 | - | GT4 |
| pfam | HRGMv2_0060_20 | HRGMv2_0060_20_29 | 30592 | 31923 | - | UDPG_MGDP_dh | NAD_Gly3P_dh_N | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | HRGMv2_0060_20 | HRGMv2_0060_20_30 | 31943 | 33085 | + | GT4 |
| pfam | HRGMv2_0060_20 | HRGMv2_0060_20_31 | 33107 | 34387 | - | Polysacc_synt_3 |
| CAZyme | HRGMv2_0060_20 | HRGMv2_0060_20_32 | 34481 | 35584 | + | GT4 |
Gene ID: HRGMv2_0060_20_21
Type: TC
Location: 20291 - 21505 (-)
Type: TC
Location: 20291 - 21505 (-)
Gene ID: HRGMv2_0060_20_22
Type: pfam
Location: 21538 - 22830 (+)
Type: pfam
Location: 21538 - 22830 (+)
Gene ID: HRGMv2_0060_20_23
Type: pfam
Location: 22951 - 23343 (-)
Type: pfam
Location: 22951 - 23343 (-)
Gene ID: HRGMv2_0060_20_24
Type: CAZyme
Location: 23340 - 24095 (-)
Type: CAZyme
Location: 23340 - 24095 (-)
Gene ID: HRGMv2_0060_20_25
Type: pfam
Location: 24096 - 24968 (-)
Type: pfam
Location: 24096 - 24968 (-)
Gene ID: HRGMv2_0060_20_26
Type: pfam
Location: 25164 - 26591 (+)
Type: pfam
Location: 25164 - 26591 (+)
Gene ID: HRGMv2_0060_20_27
Type: CAZyme
Location: 27144 - 29204 (-)
Type: CAZyme
Location: 27144 - 29204 (-)
Gene ID: HRGMv2_0060_20_28
Type: CAZyme
Location: 29417 - 30598 (-)
Type: CAZyme
Location: 29417 - 30598 (-)
Gene ID: HRGMv2_0060_20_29
Type: pfam
Location: 30592 - 31923 (-)
Type: pfam
Location: 30592 - 31923 (-)
Gene ID: HRGMv2_0060_20_30
Type: CAZyme
Location: 31943 - 33085 (+)
Type: CAZyme
Location: 31943 - 33085 (+)
Gene ID: HRGMv2_0060_20_31
Type: pfam
Location: 33107 - 34387 (-)
Type: pfam
Location: 33107 - 34387 (-)
Gene ID: HRGMv2_0060_20_32
Type: CAZyme
Location: 34481 - 35584 (+)
Type: CAZyme
Location: 34481 - 35584 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia odontolytica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.