Cluster: HRGMv2_0054_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0054
- CGC Family ID: CGCFAM_02184
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0054_23 | HRGMv2_0054_23_12 | 17222 | 19111 | + | 4.C.1.1.14 |
| TC | HRGMv2_0054_23 | HRGMv2_0054_23_13 | 19201 | 20409 | - | 3.A.1.122.2 |
| TC | HRGMv2_0054_23 | HRGMv2_0054_23_14 | 20399 | 21097 | - | 3.A.1.122.2 |
| pfam | HRGMv2_0054_23 | HRGMv2_0054_23_15 | 21094 | 22170 | - | PG_binding_1 | HlyD_3 |
| NULL(UNKNOWN) | HRGMv2_0054_23 | HRGMv2_0054_23_16 | 22167 | 22643 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0054_23 | HRGMv2_0054_23_17 | 22850 | 24292 | - | 2.A.2.2.3 |
| CAZyme | HRGMv2_0054_23 | HRGMv2_0054_23_18 | 24481 | 26646 | + | GH2 |
Gene ID: HRGMv2_0054_23_12
Type: TC
Location: 17222 - 19111 (+)
Type: TC
Location: 17222 - 19111 (+)
Gene ID: HRGMv2_0054_23_13
Type: TC
Location: 19201 - 20409 (-)
Type: TC
Location: 19201 - 20409 (-)
Gene ID: HRGMv2_0054_23_14
Type: TC
Location: 20399 - 21097 (-)
Type: TC
Location: 20399 - 21097 (-)
Gene ID: HRGMv2_0054_23_15
Type: pfam
Location: 21094 - 22170 (-)
Type: pfam
Location: 21094 - 22170 (-)
Gene ID: HRGMv2_0054_23_16
Type:
Location: 22167 - 22643 (-)
Type:
Location: 22167 - 22643 (-)
Gene ID: HRGMv2_0054_23_17
Type: TC
Location: 22850 - 24292 (-)
Type: TC
Location: 22850 - 24292 (-)
Gene ID: HRGMv2_0054_23_18
Type: CAZyme
Location: 24481 - 26646 (+)
Type: CAZyme
Location: 24481 - 26646 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.