Cluster: HRGMv2_0045_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0045
- CGC Family ID: CGCFAM_00858
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0045_7 | HRGMv2_0045_7_29 | 30308 | 31249 | + | 2.A.7.3.52 |
| STP | HRGMv2_0045_7 | HRGMv2_0045_7_30 | 31347 | 31868 | + | Nitroreductase |
| CAZyme | HRGMv2_0045_7 | HRGMv2_0045_7_31 | 32188 | 33396 | - | GH171 |
| TC | HRGMv2_0045_7 | HRGMv2_0045_7_32 | 33757 | 34911 | - | 9.B.174.1.1 |
| STP | HRGMv2_0045_7 | HRGMv2_0045_7_33 | 34930 | 36075 | - | Peptidase_M23 |
| pfam | HRGMv2_0045_7 | HRGMv2_0045_7_34 | 36091 | 37002 | - | FtsX | FtsX_ECD |
| TC | HRGMv2_0045_7 | HRGMv2_0045_7_35 | 36968 | 37654 | - | 3.A.1.140.1 |
Gene ID: HRGMv2_0045_7_29
Type: TC
Location: 30308 - 31249 (+)
Type: TC
Location: 30308 - 31249 (+)
Gene ID: HRGMv2_0045_7_30
Type: STP
Location: 31347 - 31868 (+)
Type: STP
Location: 31347 - 31868 (+)
Gene ID: HRGMv2_0045_7_31
Type: CAZyme
Location: 32188 - 33396 (-)
Type: CAZyme
Location: 32188 - 33396 (-)
Gene ID: HRGMv2_0045_7_32
Type: TC
Location: 33757 - 34911 (-)
Type: TC
Location: 33757 - 34911 (-)
Gene ID: HRGMv2_0045_7_33
Type: STP
Location: 34930 - 36075 (-)
Type: STP
Location: 34930 - 36075 (-)
Gene ID: HRGMv2_0045_7_34
Type: pfam
Location: 36091 - 37002 (-)
Type: pfam
Location: 36091 - 37002 (-)
Gene ID: HRGMv2_0045_7_35
Type: TC
Location: 36968 - 37654 (-)
Type: TC
Location: 36968 - 37654 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.