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Cluster: HRGMv2_0045_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0045_5 HRGMv2_0045_5_19 19226 20818 + GT83
TC HRGMv2_0045_5 HRGMv2_0045_5_20 20951 22147 + 2.A.1.59.4
TC HRGMv2_0045_5 HRGMv2_0045_5_21 22561 23907 + 2.A.25.1.4
TC HRGMv2_0045_5 HRGMv2_0045_5_22 24412 25788 + 2.A.25.1.4
pfam HRGMv2_0045_5 HRGMv2_0045_5_23 26226 26768 + Lipase_GDSL_2
TC HRGMv2_0045_5 HRGMv2_0045_5_24 26844 27209 + 9.B.55.2.1
TF HRGMv2_0045_5 HRGMv2_0045_5_25 27292 28779 + HTH_11
TC HRGMv2_0045_5 HRGMv2_0045_5_26 29135 29890 + 2.A.102.4.3
TC HRGMv2_0045_5 HRGMv2_0045_5_27 30035 30859 + 3.A.1.26.7
TC HRGMv2_0045_5 HRGMv2_0045_5_28 30850 31707 + 3.A.1.26.9
TC HRGMv2_0045_5 HRGMv2_0045_5_29 31707 32522 + 3.A.1.25.6
Gene ID: HRGMv2_0045_5_19
Type: CAZyme
Location: 19226 - 20818 (+)
Gene ID: HRGMv2_0045_5_20
Type: TC
Location: 20951 - 22147 (+)
Gene ID: HRGMv2_0045_5_21
Type: TC
Location: 22561 - 23907 (+)
Gene ID: HRGMv2_0045_5_22
Type: TC
Location: 24412 - 25788 (+)
Gene ID: HRGMv2_0045_5_23
Type: pfam
Location: 26226 - 26768 (+)
Gene ID: HRGMv2_0045_5_24
Type: TC
Location: 26844 - 27209 (+)
Gene ID: HRGMv2_0045_5_25
Type: TF
Location: 27292 - 28779 (+)
Gene ID: HRGMv2_0045_5_26
Type: TC
Location: 29135 - 29890 (+)
Gene ID: HRGMv2_0045_5_27
Type: TC
Location: 30035 - 30859 (+)
Gene ID: HRGMv2_0045_5_28
Type: TC
Location: 30850 - 31707 (+)
Gene ID: HRGMv2_0045_5_29
Type: TC
Location: 31707 - 32522 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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