Cluster: HRGMv2_0045_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0045
- CGC Family ID: CGCFAM_06655
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0045_74 | HRGMv2_0045_74_2 | 227 | 1333 | - | GT4 |
| TC | HRGMv2_0045_74 | HRGMv2_0045_74_3 | 1333 | 1962 | - | 9.B.18.1.2 |
| TC | HRGMv2_0045_74 | HRGMv2_0045_74_4 | 2096 | 2800 | - | 8.A.3.3.1 |
| pfam | HRGMv2_0045_74 | HRGMv2_0045_74_5 | 2788 | 4272 | - | Wzz | GNVR |
| TC | HRGMv2_0045_74 | HRGMv2_0045_74_6 | 4284 | 4937 | - | 1.B.18.3.1 |
Gene ID: HRGMv2_0045_74_2
Type: CAZyme
Location: 227 - 1333 (-)
Type: CAZyme
Location: 227 - 1333 (-)
Gene ID: HRGMv2_0045_74_3
Type: TC
Location: 1333 - 1962 (-)
Type: TC
Location: 1333 - 1962 (-)
Gene ID: HRGMv2_0045_74_4
Type: TC
Location: 2096 - 2800 (-)
Type: TC
Location: 2096 - 2800 (-)
Gene ID: HRGMv2_0045_74_5
Type: pfam
Location: 2788 - 4272 (-)
Type: pfam
Location: 2788 - 4272 (-)
Gene ID: HRGMv2_0045_74_6
Type: TC
Location: 4284 - 4937 (-)
Type: TC
Location: 4284 - 4937 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.