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Cluster: HRGMv2_0042_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0042_20 HRGMv2_0042_20_20 21911 23515 + 2.A.58.2.2
pfam HRGMv2_0042_20 HRGMv2_0042_20_21 23539 23931 + NTase_sub_bind
STP HRGMv2_0042_20 HRGMv2_0042_20_22 23953 24243 + NTP_transf_2
CAZyme HRGMv2_0042_20 HRGMv2_0042_20_23 24301 25056 + GT2
CAZyme HRGMv2_0042_20 HRGMv2_0042_20_24 25061 25990 + GT8
pfam HRGMv2_0042_20 HRGMv2_0042_20_25 26023 27240 + Wzy_C
NULL(UNKNOWN) HRGMv2_0042_20 HRGMv2_0042_20_26 27486 28019 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0042_20 HRGMv2_0042_20_27 28016 29083 + GT9
CAZyme HRGMv2_0042_20 HRGMv2_0042_20_28 29080 30075 + GT8
Gene ID: HRGMv2_0042_20_20
Type: TC
Location: 21911 - 23515 (+)
Gene ID: HRGMv2_0042_20_21
Type: pfam
Location: 23539 - 23931 (+)
Gene ID: HRGMv2_0042_20_22
Type: STP
Location: 23953 - 24243 (+)
Gene ID: HRGMv2_0042_20_23
Type: CAZyme
Location: 24301 - 25056 (+)
Gene ID: HRGMv2_0042_20_24
Type: CAZyme
Location: 25061 - 25990 (+)
Gene ID: HRGMv2_0042_20_25
Type: pfam
Location: 26023 - 27240 (+)
Gene ID: HRGMv2_0042_20_26
Type:
Location: 27486 - 28019 (+)
Gene ID: HRGMv2_0042_20_27
Type: CAZyme
Location: 28016 - 29083 (+)
Gene ID: HRGMv2_0042_20_28
Type: CAZyme
Location: 29080 - 30075 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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