Cluster: HRGMv2_0039_CGC13
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0039
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0039_19 | HRGMv2_0039_19_36 | 42001 | 42723 | - | 3.D.1.4.1 |
| TC | HRGMv2_0039_19 | HRGMv2_0039_19_37 | 42736 | 44238 | - | 3.D.1.9.3 |
| TC | HRGMv2_0039_19 | HRGMv2_0039_19_38 | 44243 | 45718 | - | 3.D.1.9.1 |
| NULL(UNKNOWN) | HRGMv2_0039_19 | HRGMv2_0039_19_39 | 45726 | 46355 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0039_19 | HRGMv2_0039_19_40 | 46367 | 47260 | - | 3.D.1.9.1 |
| TC | HRGMv2_0039_19 | HRGMv2_0039_19_41 | 47257 | 49230 | - | 3.D.1.9.1 |
| pfam | HRGMv2_0039_19 | HRGMv2_0039_19_42 | 49481 | 50608 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_0039_19 | HRGMv2_0039_19_43 | 50608 | 53664 | + | 2.A.6.2.17 |
| STP | HRGMv2_0039_19 | HRGMv2_0039_19_44 | 53725 | 55914 | - | EAL | GGDEF |
| STP | HRGMv2_0039_19 | HRGMv2_0039_19_45 | 55954 | 57336 | - | GGDEF | dCache_1 |
| CAZyme | HRGMv2_0039_19 | HRGMv2_0039_19_46 | 57381 | 58376 | - | GH18 |
| NULL(UNKNOWN) | HRGMv2_0039_19 | HRGMv2_0039_19_47 | 58393 | 60321 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0039_19 | HRGMv2_0039_19_48 | 60318 | 62195 | - | GT2 |
| CAZyme | HRGMv2_0039_19 | HRGMv2_0039_19_49 | 62219 | 64852 | - | CE4 |
Gene ID: HRGMv2_0039_19_36
Type: TC
Location: 42001 - 42723 (-)
Type: TC
Location: 42001 - 42723 (-)
Gene ID: HRGMv2_0039_19_37
Type: TC
Location: 42736 - 44238 (-)
Type: TC
Location: 42736 - 44238 (-)
Gene ID: HRGMv2_0039_19_38
Type: TC
Location: 44243 - 45718 (-)
Type: TC
Location: 44243 - 45718 (-)
Gene ID: HRGMv2_0039_19_39
Type:
Location: 45726 - 46355 (-)
Type:
Location: 45726 - 46355 (-)
Gene ID: HRGMv2_0039_19_40
Type: TC
Location: 46367 - 47260 (-)
Type: TC
Location: 46367 - 47260 (-)
Gene ID: HRGMv2_0039_19_41
Type: TC
Location: 47257 - 49230 (-)
Type: TC
Location: 47257 - 49230 (-)
Gene ID: HRGMv2_0039_19_42
Type: pfam
Location: 49481 - 50608 (+)
Type: pfam
Location: 49481 - 50608 (+)
Gene ID: HRGMv2_0039_19_43
Type: TC
Location: 50608 - 53664 (+)
Type: TC
Location: 50608 - 53664 (+)
Gene ID: HRGMv2_0039_19_44
Type: STP
Location: 53725 - 55914 (-)
Type: STP
Location: 53725 - 55914 (-)
Gene ID: HRGMv2_0039_19_45
Type: STP
Location: 55954 - 57336 (-)
Type: STP
Location: 55954 - 57336 (-)
Gene ID: HRGMv2_0039_19_46
Type: CAZyme
Location: 57381 - 58376 (-)
Type: CAZyme
Location: 57381 - 58376 (-)
Gene ID: HRGMv2_0039_19_47
Type:
Location: 58393 - 60321 (-)
Type:
Location: 58393 - 60321 (-)
Gene ID: HRGMv2_0039_19_48
Type: CAZyme
Location: 60318 - 62195 (-)
Type: CAZyme
Location: 60318 - 62195 (-)
Gene ID: HRGMv2_0039_19_49
Type: CAZyme
Location: 62219 - 64852 (-)
Type: CAZyme
Location: 62219 - 64852 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.