Cluster: HRGMv2_0039_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0039
- CGC Family ID: CGCFAM_08497
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0039_4 | HRGMv2_0039_4_10 | 7705 | 8739 | - | 2.A.98.1.4 |
| TF | HRGMv2_0039_4 | HRGMv2_0039_4_11 | 8894 | 9787 | + | HTH_1 |
| CAZyme | HRGMv2_0039_4 | HRGMv2_0039_4_12 | 9863 | 11266 | + | AA4 |
| pfam | HRGMv2_0039_4 | HRGMv2_0039_4_13 | 11302 | 11730 | + | C_GCAxxG_C_C |
| STP | HRGMv2_0039_4 | HRGMv2_0039_4_14 | 11824 | 12201 | + | Rhodanese |
| TC | HRGMv2_0039_4 | HRGMv2_0039_4_15 | 12341 | 14752 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_0039_4_10
Type: TC
Location: 7705 - 8739 (-)
Type: TC
Location: 7705 - 8739 (-)
Gene ID: HRGMv2_0039_4_11
Type: TF
Location: 8894 - 9787 (+)
Type: TF
Location: 8894 - 9787 (+)
Gene ID: HRGMv2_0039_4_12
Type: CAZyme
Location: 9863 - 11266 (+)
Type: CAZyme
Location: 9863 - 11266 (+)
Gene ID: HRGMv2_0039_4_13
Type: pfam
Location: 11302 - 11730 (+)
Type: pfam
Location: 11302 - 11730 (+)
Gene ID: HRGMv2_0039_4_14
Type: STP
Location: 11824 - 12201 (+)
Type: STP
Location: 11824 - 12201 (+)
Gene ID: HRGMv2_0039_4_15
Type: TC
Location: 12341 - 14752 (+)
Type: TC
Location: 12341 - 14752 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.