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Cluster: HRGMv2_0035_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0035_17 HRGMv2_0035_17_3 5308 6576 - 2.A.40.1.1
TC HRGMv2_0035_17 HRGMv2_0035_17_4 7286 11407 - 1.B.12.2.4
pfam HRGMv2_0035_17 HRGMv2_0035_17_5 11666 11932 - Ribosomal_S15
pfam HRGMv2_0035_17 HRGMv2_0035_17_6 12059 12739 - Asp_Glu_race
TC HRGMv2_0035_17 HRGMv2_0035_17_7 12747 13481 - 3.A.1.3.15
TC HRGMv2_0035_17 HRGMv2_0035_17_8 13474 14130 - 3.A.1.3.15
TC HRGMv2_0035_17 HRGMv2_0035_17_9 14159 14995 - 3.A.1.3.25
STP HRGMv2_0035_17 HRGMv2_0035_17_10 15017 15841 - SBP_bac_3
pfam HRGMv2_0035_17 HRGMv2_0035_17_11 15871 16716 - Polysacc_deac_1
CAZyme HRGMv2_0035_17 HRGMv2_0035_17_12 16713 17564 - CE4
Gene ID: HRGMv2_0035_17_3
Type: TC
Location: 5308 - 6576 (-)
Gene ID: HRGMv2_0035_17_4
Type: TC
Location: 7286 - 11407 (-)
Gene ID: HRGMv2_0035_17_5
Type: pfam
Location: 11666 - 11932 (-)
Gene ID: HRGMv2_0035_17_6
Type: pfam
Location: 12059 - 12739 (-)
Gene ID: HRGMv2_0035_17_7
Type: TC
Location: 12747 - 13481 (-)
Gene ID: HRGMv2_0035_17_8
Type: TC
Location: 13474 - 14130 (-)
Gene ID: HRGMv2_0035_17_9
Type: TC
Location: 14159 - 14995 (-)
Gene ID: HRGMv2_0035_17_10
Type: STP
Location: 15017 - 15841 (-)
Gene ID: HRGMv2_0035_17_11
Type: pfam
Location: 15871 - 16716 (-)
Gene ID: HRGMv2_0035_17_12
Type: CAZyme
Location: 16713 - 17564 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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