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Cluster: HRGMv2_0035_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0035_14 HRGMv2_0035_14_38 38354 40432 + 9.A.8.1.6
STP HRGMv2_0035_14 HRGMv2_0035_14_39 40580 40798 + HMA
TC HRGMv2_0035_14 HRGMv2_0035_14_40 40835 42745 + 3.A.3.6.10
NULL(UNKNOWN) HRGMv2_0035_14 HRGMv2_0035_14_41 42766 42900 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0035_14 HRGMv2_0035_14_42 42890 43816 + Semialdhyde_dh | Semialdhyde_dhC_1
TC HRGMv2_0035_14 HRGMv2_0035_14_43 44133 44861 + 3.A.1.3.16
TC HRGMv2_0035_14 HRGMv2_0035_14_44 44915 45793 + 3.A.1.3.16
TC HRGMv2_0035_14 HRGMv2_0035_14_45 45874 46569 + 3.A.1.3.16
TC HRGMv2_0035_14 HRGMv2_0035_14_46 46580 47374 + 3.A.1.3.18
TC HRGMv2_0035_14 HRGMv2_0035_14_47 47505 48938 + 2.A.21.3.21
CAZyme HRGMv2_0035_14 HRGMv2_0035_14_48 49004 50155 + GH73
pfam HRGMv2_0035_14 HRGMv2_0035_14_49 50152 50622 + SpoU_methylase
pfam HRGMv2_0035_14 HRGMv2_0035_14_50 50619 50981 + PTPS
TC HRGMv2_0035_14 HRGMv2_0035_14_51 50975 51742 + 9.B.10.1.1
Gene ID: HRGMv2_0035_14_38
Type: TC
Location: 38354 - 40432 (+)
Gene ID: HRGMv2_0035_14_39
Type: STP
Location: 40580 - 40798 (+)
Gene ID: HRGMv2_0035_14_40
Type: TC
Location: 40835 - 42745 (+)
Gene ID: HRGMv2_0035_14_41
Type:
Location: 42766 - 42900 (+)
Gene ID: HRGMv2_0035_14_42
Type: pfam
Location: 42890 - 43816 (+)
Gene ID: HRGMv2_0035_14_43
Type: TC
Location: 44133 - 44861 (+)
Gene ID: HRGMv2_0035_14_44
Type: TC
Location: 44915 - 45793 (+)
Gene ID: HRGMv2_0035_14_45
Type: TC
Location: 45874 - 46569 (+)
Gene ID: HRGMv2_0035_14_46
Type: TC
Location: 46580 - 47374 (+)
Gene ID: HRGMv2_0035_14_47
Type: TC
Location: 47505 - 48938 (+)
Gene ID: HRGMv2_0035_14_48
Type: CAZyme
Location: 49004 - 50155 (+)
Gene ID: HRGMv2_0035_14_49
Type: pfam
Location: 50152 - 50622 (+)
Gene ID: HRGMv2_0035_14_50
Type: pfam
Location: 50619 - 50981 (+)
Gene ID: HRGMv2_0035_14_51
Type: TC
Location: 50975 - 51742 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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