Cluster: HRGMv2_0032_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0032
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0032_23 | HRGMv2_0032_23_19 | 16427 | 17152 | - | 3.A.1.3.15 |
| TC | HRGMv2_0032_23 | HRGMv2_0032_23_20 | 17145 | 17801 | - | 3.A.1.3.15 |
| TC | HRGMv2_0032_23 | HRGMv2_0032_23_21 | 17818 | 18645 | - | 3.A.1.3.23 |
| pfam | HRGMv2_0032_23 | HRGMv2_0032_23_22 | 18667 | 19500 | - | Polysacc_deac_1 |
| CAZyme | HRGMv2_0032_23 | HRGMv2_0032_23_23 | 19500 | 20351 | - | CE4 |
Gene ID: HRGMv2_0032_23_19
Type: TC
Location: 16427 - 17152 (-)
Type: TC
Location: 16427 - 17152 (-)
Gene ID: HRGMv2_0032_23_20
Type: TC
Location: 17145 - 17801 (-)
Type: TC
Location: 17145 - 17801 (-)
Gene ID: HRGMv2_0032_23_21
Type: TC
Location: 17818 - 18645 (-)
Type: TC
Location: 17818 - 18645 (-)
Gene ID: HRGMv2_0032_23_22
Type: pfam
Location: 18667 - 19500 (-)
Type: pfam
Location: 18667 - 19500 (-)
Gene ID: HRGMv2_0032_23_23
Type: CAZyme
Location: 19500 - 20351 (-)
Type: CAZyme
Location: 19500 - 20351 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.