Cluster: HRGMv2_0031_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0031
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0031_4 | HRGMv2_0031_4_10 | 10988 | 11674 | + | 3.A.1.140.1 |
| pfam | HRGMv2_0031_4 | HRGMv2_0031_4_11 | 11664 | 12551 | + | FtsX | FtsX_ECD |
| STP | HRGMv2_0031_4 | HRGMv2_0031_4_12 | 12567 | 13700 | + | Peptidase_M23 |
| TC | HRGMv2_0031_4 | HRGMv2_0031_4_13 | 13731 | 14879 | + | 9.B.174.1.1 |
| pfam | HRGMv2_0031_4 | HRGMv2_0031_4_14 | 14979 | 16424 | + | PGI |
| TC | HRGMv2_0031_4 | HRGMv2_0031_4_15 | 16476 | 17360 | + | 3.A.11.1.4 |
| CAZyme | HRGMv2_0031_4 | HRGMv2_0031_4_16 | 17398 | 18225 | - | GT51 |
Gene ID: HRGMv2_0031_4_10
Type: TC
Location: 10988 - 11674 (+)
Type: TC
Location: 10988 - 11674 (+)
Gene ID: HRGMv2_0031_4_11
Type: pfam
Location: 11664 - 12551 (+)
Type: pfam
Location: 11664 - 12551 (+)
Gene ID: HRGMv2_0031_4_12
Type: STP
Location: 12567 - 13700 (+)
Type: STP
Location: 12567 - 13700 (+)
Gene ID: HRGMv2_0031_4_13
Type: TC
Location: 13731 - 14879 (+)
Type: TC
Location: 13731 - 14879 (+)
Gene ID: HRGMv2_0031_4_14
Type: pfam
Location: 14979 - 16424 (+)
Type: pfam
Location: 14979 - 16424 (+)
Gene ID: HRGMv2_0031_4_15
Type: TC
Location: 16476 - 17360 (+)
Type: TC
Location: 16476 - 17360 (+)
Gene ID: HRGMv2_0031_4_16
Type: CAZyme
Location: 17398 - 18225 (-)
Type: CAZyme
Location: 17398 - 18225 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.