Cluster: HRGMv2_0031_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0031
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0031_1 | HRGMv2_0031_1_18 | 17214 | 18338 | + | GT28 |
| TC | HRGMv2_0031_1 | HRGMv2_0031_1_19 | 18454 | 19551 | + | 3.A.11.1.3 |
| pfam | HRGMv2_0031_1 | HRGMv2_0031_1_20 | 19566 | 21683 | + | Topoisom_bac | Zn_ribbon_Top1 | Zn_ribbon_Top1 | Zn_ribbon_Top1 | Toprim |
| pfam | HRGMv2_0031_1 | HRGMv2_0031_1_21 | 21628 | 22992 | + | GIDA |
| TC | HRGMv2_0031_1 | HRGMv2_0031_1_22 | 22999 | 23658 | + | 2.A.115.2.15 |
Gene ID: HRGMv2_0031_1_18
Type: CAZyme
Location: 17214 - 18338 (+)
Type: CAZyme
Location: 17214 - 18338 (+)
Gene ID: HRGMv2_0031_1_19
Type: TC
Location: 18454 - 19551 (+)
Type: TC
Location: 18454 - 19551 (+)
Gene ID: HRGMv2_0031_1_20
Type: pfam
Location: 19566 - 21683 (+)
Type: pfam
Location: 19566 - 21683 (+)
Gene ID: HRGMv2_0031_1_21
Type: pfam
Location: 21628 - 22992 (+)
Type: pfam
Location: 21628 - 22992 (+)
Gene ID: HRGMv2_0031_1_22
Type: TC
Location: 22999 - 23658 (+)
Type: TC
Location: 22999 - 23658 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.