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Cluster: HRGMv2_0027_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0027_3 HRGMv2_0027_3_9 8379 12014 - GH13_39 | GH77
CAZyme HRGMv2_0027_3 HRGMv2_0027_3_10 12095 14065 - GT5
CAZyme HRGMv2_0027_3 HRGMv2_0027_3_11 14062 16152 - CBM48 | GH13_9
CAZyme HRGMv2_0027_3 HRGMv2_0027_3_12 16184 18499 - GT35
pfam HRGMv2_0027_3 HRGMv2_0027_3_13 18698 19810 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_0027_3 HRGMv2_0027_3_14 19814 20989 - NTP_transferase | Hexapep_GlmU
TC HRGMv2_0027_3 HRGMv2_0027_3_15 21455 22633 + 3.A.1.4.10
TC HRGMv2_0027_3 HRGMv2_0027_3_16 22849 24015 + 3.A.1.4.10
TC HRGMv2_0027_3 HRGMv2_0027_3_17 24105 24998 + 3.A.1.4.10
TC HRGMv2_0027_3 HRGMv2_0027_3_18 25011 25958 + 3.A.1.4.10
TC HRGMv2_0027_3 HRGMv2_0027_3_19 25955 26737 + 3.A.1.4.10
TC HRGMv2_0027_3 HRGMv2_0027_3_20 26739 27449 + 3.A.1.4.10
Gene ID: HRGMv2_0027_3_9
Type: CAZyme
Location: 8379 - 12014 (-)
Gene ID: HRGMv2_0027_3_10
Type: CAZyme
Location: 12095 - 14065 (-)
Gene ID: HRGMv2_0027_3_11
Type: CAZyme
Location: 14062 - 16152 (-)
Gene ID: HRGMv2_0027_3_12
Type: CAZyme
Location: 16184 - 18499 (-)
Gene ID: HRGMv2_0027_3_13
Type: pfam
Location: 18698 - 19810 (-)
Gene ID: HRGMv2_0027_3_14
Type: pfam
Location: 19814 - 20989 (-)
Gene ID: HRGMv2_0027_3_15
Type: TC
Location: 21455 - 22633 (+)
Gene ID: HRGMv2_0027_3_16
Type: TC
Location: 22849 - 24015 (+)
Gene ID: HRGMv2_0027_3_17
Type: TC
Location: 24105 - 24998 (+)
Gene ID: HRGMv2_0027_3_18
Type: TC
Location: 25011 - 25958 (+)
Gene ID: HRGMv2_0027_3_19
Type: TC
Location: 25955 - 26737 (+)
Gene ID: HRGMv2_0027_3_20
Type: TC
Location: 26739 - 27449 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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