Cluster: HRGMv2_0026_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0026
- CGC Family ID: CGCFAM_08498
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_28 | 27893 | 28708 | - | 3.A.1.26.7 |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_29 | 28708 | 29565 | - | 3.A.1.26.9 |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_30 | 29556 | 30380 | - | 3.A.1.26.7 |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_31 | 30690 | 31400 | - | 3.A.1.4.10 |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_32 | 31393 | 32190 | - | 3.A.1.4.10 |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_33 | 32183 | 33253 | - | 3.A.1.4.10 |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_34 | 33256 | 34188 | - | 3.A.1.4.10 |
| pfam | HRGMv2_0026_10 | HRGMv2_0026_10_35 | 34268 | 35434 | - | ANF_receptor | Peripla_BP_5 | Peripla_BP_5 | Peripla_BP_6 |
| NULL(UNKNOWN) | HRGMv2_0026_10 | HRGMv2_0026_10_36 | 35851 | 36003 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0026_10 | HRGMv2_0026_10_37 | 36104 | 37447 | - | 2.A.25.1.4 |
| NULL(UNKNOWN) | HRGMv2_0026_10 | HRGMv2_0026_10_38 | 37852 | 38004 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0026_10 | HRGMv2_0026_10_39 | 37991 | 39676 | - | GT83 |
Gene ID: HRGMv2_0026_10_28
Type: TC
Location: 27893 - 28708 (-)
Type: TC
Location: 27893 - 28708 (-)
Gene ID: HRGMv2_0026_10_29
Type: TC
Location: 28708 - 29565 (-)
Type: TC
Location: 28708 - 29565 (-)
Gene ID: HRGMv2_0026_10_30
Type: TC
Location: 29556 - 30380 (-)
Type: TC
Location: 29556 - 30380 (-)
Gene ID: HRGMv2_0026_10_31
Type: TC
Location: 30690 - 31400 (-)
Type: TC
Location: 30690 - 31400 (-)
Gene ID: HRGMv2_0026_10_32
Type: TC
Location: 31393 - 32190 (-)
Type: TC
Location: 31393 - 32190 (-)
Gene ID: HRGMv2_0026_10_33
Type: TC
Location: 32183 - 33253 (-)
Type: TC
Location: 32183 - 33253 (-)
Gene ID: HRGMv2_0026_10_34
Type: TC
Location: 33256 - 34188 (-)
Type: TC
Location: 33256 - 34188 (-)
Gene ID: HRGMv2_0026_10_35
Type: pfam
Location: 34268 - 35434 (-)
Type: pfam
Location: 34268 - 35434 (-)
Gene ID: HRGMv2_0026_10_36
Type:
Location: 35851 - 36003 (-)
Type:
Location: 35851 - 36003 (-)
Gene ID: HRGMv2_0026_10_37
Type: TC
Location: 36104 - 37447 (-)
Type: TC
Location: 36104 - 37447 (-)
Gene ID: HRGMv2_0026_10_38
Type:
Location: 37852 - 38004 (-)
Type:
Location: 37852 - 38004 (-)
Gene ID: HRGMv2_0026_10_39
Type: CAZyme
Location: 37991 - 39676 (-)
Type: CAZyme
Location: 37991 - 39676 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.