Cluster: HRGMv2_0026_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0026
- CGC Family ID: CGCFAM_00465
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0026_14 | HRGMv2_0026_14_34 | 44246 | 45805 | - | GT83 |
| pfam | HRGMv2_0026_14 | HRGMv2_0026_14_35 | 45805 | 46737 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | HRGMv2_0026_14 | HRGMv2_0026_14_36 | 46797 | 47822 | - | 4.D.2.1.4 |
| pfam | HRGMv2_0026_14 | HRGMv2_0026_14_37 | 47912 | 48760 | - | YdjC |
| pfam | HRGMv2_0026_14 | HRGMv2_0026_14_38 | 48933 | 49895 | - | RNase_HII |
| TC | HRGMv2_0026_14 | HRGMv2_0026_14_39 | 49897 | 52980 | - | 2.A.6.3.1 |
| TC | HRGMv2_0026_14 | HRGMv2_0026_14_40 | 52983 | 54101 | - | 2.A.6.2.35 |
Gene ID: HRGMv2_0026_14_34
Type: CAZyme
Location: 44246 - 45805 (-)
Type: CAZyme
Location: 44246 - 45805 (-)
Gene ID: HRGMv2_0026_14_35
Type: pfam
Location: 45805 - 46737 (-)
Type: pfam
Location: 45805 - 46737 (-)
Gene ID: HRGMv2_0026_14_36
Type: TC
Location: 46797 - 47822 (-)
Type: TC
Location: 46797 - 47822 (-)
Gene ID: HRGMv2_0026_14_37
Type: pfam
Location: 47912 - 48760 (-)
Type: pfam
Location: 47912 - 48760 (-)
Gene ID: HRGMv2_0026_14_38
Type: pfam
Location: 48933 - 49895 (-)
Type: pfam
Location: 48933 - 49895 (-)
Gene ID: HRGMv2_0026_14_39
Type: TC
Location: 49897 - 52980 (-)
Type: TC
Location: 49897 - 52980 (-)
Gene ID: HRGMv2_0026_14_40
Type: TC
Location: 52983 - 54101 (-)
Type: TC
Location: 52983 - 54101 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.